GEO help: Mouse over screen elements for information.
Status
Public on Sep 29, 2005
Title
GE Healthcare/Amersham Biosciences CodeLinkā¢ Mouse Whole Genome Bioarray
Technology type
spotted oligonucleotide
Distribution
commercial
Organism
Mus musculus
Manufacturer
GE Healthcare
Manufacture protocol
http://www4.amershambiosciences.com/aptrix/upp01077.nsf/Content/codelink_user_protocols
Catalog number
300033
Support
glass
Coating
other
Description
Mice exhibit high similarity to many human biological pathways, making it a key model system for human physiological and toxicological studies in drug discovery applications. The probe sequences, representing well annotated, full length and partial mouse gene sequences, were designed based on sequences selected from the NCBI UniGene build #139, RefSeq database (April 1, 2004 release) and dbEST database (July 31, 2004 release).Well-annotated mRNA or coding sequences were chosen to ensure usefulness for a large range of applications in basic research, biotechnology, and drug development. Each sequence was carefully screened to ensure high-quality, specific probe design, and to reduce redundancy of gene targets. All of the probes designed to these sequences were functionally tested, and over 97% were functionally validated against 14 mouse tissues to ensure best representation of the gene and biologically relevant results. For flexibility and data preservation, CodeLink Mouse Whole Genome Bioarrays are compatible with lower density CodeLink mouse bioarrays. This means that existing data from CodeLink UniSet Mouse 20K Bioarrays can be continuously used in future studies along with newly generated data from CodeLink Mouse Whole Genome Bioarrays. CodeLink users can submit data to GEO by exporting tab-delimited text files from the CodeLink software. The "Feature_id" header will need to be renamed to "ID_REF", and the "Normalized_intensity" header to "VALUE" before uploading the exported tables. In addition, users are encouraged to include additional raw data columns in their data uploads. These additional columns do not need to be renamed.
Web link
http://www4.amershambiosciences.com/aptrix/upp01077.nsf/Content/codelink_uniset_mouse1_bioarray
Submission date
Sep 26, 2005
Last update date
Mar 25, 2013
Contact name
Randall Lockner
E-mail(s)
randall.lockner@ge.com
Phone
480-722-2311
Fax
480-722-2334
URL
http://www.codelinkbioarrays.com
Organization name
GE Healthcare Life Sciences
Department
Bioinformatics
Street address
7700 S River Parkway
City
Tempe
State/province
AZ
ZIP/Postal code
85284
Country
USA
Samples (676)
GSM83090 , GSM83100 , GSM83101 , GSM83102 , GSM83103 , GSM83104
GSM83105 ,
GSM83106 ,
GSM83107 ,
GSM83108 ,
GSM96290 ,
GSM96291 ,
GSM96292 ,
GSM96293 ,
GSM96294 ,
GSM96295 ,
GSM96296 ,
GSM96297 ,
GSM96298 ,
GSM96299 ,
GSM96300 ,
GSM116209 ,
GSM116210 ,
GSM116211 ,
GSM116212 ,
GSM116213 ,
GSM116214 ,
GSM116215 ,
GSM116216 ,
GSM116217 ,
GSM116218 ,
GSM116219 ,
GSM116220 ,
GSM116221 ,
GSM116222 ,
GSM116223 ,
GSM116224 ,
GSM116225 ,
GSM116226 ,
GSM116227 ,
GSM116228 ,
GSM116229 ,
GSM116230 ,
GSM116231 ,
GSM116232 ,
GSM116233 ,
GSM116234 ,
GSM116235 ,
GSM116236 ,
GSM116237 ,
GSM116238 ,
GSM116239 ,
GSM116240 ,
GSM116241 ,
GSM116242 ,
GSM116243 ,
GSM116244 ,
GSM116245 ,
GSM116246 ,
GSM116247 ,
GSM116248 ,
GSM116249 ,
GSM116250 ,
GSM116251 ,
GSM116252 ,
GSM116253 ,
GSM116254 ,
GSM116255 ,
GSM116256 ,
GSM116257 ,
GSM116258 ,
GSM116259 ,
GSM116260 ,
GSM116261 ,
GSM116262 ,
GSM116263 ,
GSM116264 ,
GSM116265 ,
GSM116266 ,
GSM116267 ,
GSM116268 ,
GSM116269 ,
GSM116270 ,
GSM116271 ,
GSM116272 ,
GSM116273 ,
GSM116274 ,
GSM116275 ,
GSM116276 ,
GSM116277 ,
GSM116278 ,
GSM116279 ,
GSM116280 ,
GSM116281 ,
GSM116282 ,
GSM116283 ,
GSM116284 ,
GSM116285 ,
GSM116286 ,
GSM116287 ,
GSM116288 ,
GSM116289 ,
GSM116290 ,
GSM116291 ,
GSM116752 ,
GSM116753 ,
GSM116754 ,
GSM116755 ,
GSM116756 ,
GSM116757 ,
GSM116758 ,
GSM116759 ,
GSM116760 ,
GSM116761 ,
GSM116762 ,
GSM116763 ,
GSM116764 ,
GSM116765 ,
GSM121658 ,
GSM121659 ,
GSM142097 ,
GSM142098 ,
GSM142099 ,
GSM142100 ,
GSM142101 ,
GSM142102 ,
GSM149667 ,
GSM153970 ,
GSM153977 ,
GSM153979 ,
GSM153981 ,
GSM153982 ,
GSM155282 ,
GSM155283 ,
GSM155284 ,
GSM155285 ,
GSM155286 ,
GSM155287 ,
GSM155288 ,
GSM155289 ,
GSM155290 ,
GSM155291 ,
GSM155292 ,
GSM155293 ,
GSM155397 ,
GSM155398 ,
GSM155399 ,
GSM155400 ,
GSM155401 ,
GSM155402 ,
GSM155403 ,
GSM155404 ,
GSM155405 ,
GSM155406 ,
GSM155407 ,
GSM155408 ,
GSM155410 ,
GSM155411 ,
GSM155412 ,
GSM155413 ,
GSM155414 ,
GSM155415 ,
GSM155416 ,
GSM155417 ,
GSM155418 ,
GSM155419 ,
GSM155420 ,
GSM155421 ,
GSM157689 ,
GSM157690 ,
GSM157691 ,
GSM157692 ,
GSM157693 ,
GSM157694 ,
GSM157695 ,
GSM157696 ,
GSM157697 ,
GSM157698 ,
GSM157699 ,
GSM157700 ,
GSM157701 ,
GSM157702 ,
GSM157703 ,
GSM157704 ,
GSM157705 ,
GSM157706 ,
GSM157707 ,
GSM157708 ,
GSM157709 ,
GSM157710 ,
GSM157711 ,
GSM157712 ,
GSM157713 ,
GSM157714 ,
GSM157715 ,
GSM157716 ,
GSM157717 ,
GSM157718 ,
GSM157719 ,
GSM157720 ,
GSM157721 ,
GSM157722 ,
GSM157723 ,
GSM157724 ,
GSM158696 ,
GSM159307 ,
GSM159308 ,
GSM159309 ,
GSM159310 ,
GSM159311 ,
GSM159313 ,
GSM159317 ,
GSM159320 ,
GSM159323 ,
GSM198683 ,
GSM198684 ,
GSM198685 ,
GSM198686 ,
GSM198687 ,
GSM198688 ,
GSM198689 ,
GSM198690 ,
GSM198691 ,
GSM198692 ,
GSM198693 ,
GSM198694 ,
GSM198695 ,
GSM198696 ,
GSM198697 ,
GSM198698 ,
GSM198699 ,
GSM198700 ,
GSM198701 ,
GSM198702 ,
GSM198703 ,
GSM198704 ,
GSM198705 ,
GSM198706 ,
GSM198707 ,
GSM198708 ,
GSM198709 ,
GSM198710 ,
GSM198711 ,
GSM198712 ,
GSM198713 ,
GSM198714 ,
GSM198715 ,
GSM198716 ,
GSM198717 ,
GSM198718 ,
GSM198719 ,
GSM198720 ,
GSM198721 ,
GSM198722 ,
GSM198723 ,
GSM198724 ,
GSM198725 ,
GSM198726 ,
GSM198727 ,
GSM198728 ,
GSM198729 ,
GSM198730 ,
GSM198731 ,
GSM198732 ,
GSM198733 ,
GSM198734 ,
GSM198735 ,
GSM198736 ,
GSM198737 ,
GSM198738 ,
GSM218357 ,
GSM218358 ,
GSM218359 ,
GSM218360 ,
GSM218361 ,
GSM218362 ,
GSM218363 ,
GSM218364 ,
GSM260538 ,
GSM260539 ,
GSM260540 ,
GSM260544 ,
GSM260545 ,
GSM260546 ,
GSM285913 ,
GSM285914 ,
GSM285915 ,
GSM285916 ,
GSM285917 ,
GSM285918 ,
GSM285919 ,
GSM285920 ,
GSM285921 ,
GSM285922 ,
GSM285923 ,
GSM285924 ,
GSM285925 ,
GSM285926 ,
GSM285927 ,
GSM285928 ,
GSM285929 ,
GSM285930 ,
GSM285931 ,
GSM285932 ,
GSM285933 ,
GSM285934 ,
GSM285935 ,
GSM297497 ,
GSM297498 ,
GSM297499 ,
GSM297500 ,
GSM297501 ,
GSM297502 ,
GSM297503 ,
GSM297504 ,
GSM297505 ,
GSM297506 ,
GSM297507 ,
GSM297508 ,
GSM298047 ,
GSM298048 ,
GSM298049 ,
GSM298050 ,
GSM298051 ,
GSM298052 ,
GSM298265 ,
GSM298268 ,
GSM298270 ,
GSM298271 ,
GSM298272 ,
GSM298273 ,
GSM298274 ,
GSM298275 ,
GSM312098 ,
GSM312099 ,
GSM312100 ,
GSM312101 ,
GSM312102 ,
GSM312103 ,
GSM312104 ,
GSM312105 ,
GSM312106 ,
GSM312107 ,
GSM312108 ,
GSM312109 ,
GSM312110 ,
GSM312111 ,
GSM312112 ,
GSM312113 ,
GSM312114 ,
GSM312115 ,
GSM312116 ,
GSM312117 ,
GSM312118 ,
GSM312119 ,
GSM312120 ,
GSM312121 ,
GSM312122 ,
GSM312123 ,
GSM312124 ,
GSM312125 ,
GSM312126 ,
GSM312127 ,
GSM350986 ,
GSM350987 ,
GSM350988 ,
GSM350989 ,
GSM350990 ,
GSM350991 ,
GSM361858 ,
GSM361859 ,
GSM365253 ,
GSM365254 ,
GSM365255 ,
GSM365256 ,
GSM372368 ,
GSM372369 ,
GSM372370 ,
GSM372371 ,
GSM372372 ,
GSM372373 ,
GSM372374 ,
GSM372375 ,
GSM372376 ,
GSM372377 ,
GSM372378 ,
GSM372379 ,
GSM396663 ,
GSM396737 ,
GSM396738 ,
GSM396741 ,
GSM396814 ,
GSM396815 ,
GSM418263 ,
GSM418264 ,
GSM418265 ,
GSM418266 ,
GSM418267 ,
GSM418268 ,
GSM418269 ,
GSM418270 ,
GSM418271 ,
GSM418272 ,
GSM418273 ,
GSM418274 ,
GSM422311 ,
GSM422312 ,
GSM422313 ,
GSM422314 ,
GSM461340 ,
GSM461341 ,
GSM461342 ,
GSM461343 ,
GSM461344 ,
GSM461345 ,
GSM506129 ,
GSM506130 ,
GSM506131 ,
GSM506132 ,
GSM506133 ,
GSM506134 ,
GSM506135 ,
GSM506136 ,
GSM506137 ,
GSM506138 ,
GSM506139 ,
GSM506140 ,
GSM579209 ,
GSM579210 ,
GSM579211 ,
GSM579212 ,
GSM579213 ,
GSM579214 ,
GSM579215 ,
GSM579216 ,
GSM579217 ,
GSM579218 ,
GSM579219 ,
GSM579220 ,
GSM579221 ,
GSM579222 ,
GSM579223 ,
GSM579224 ,
GSM579225 ,
GSM579226 ,
GSM579227 ,
GSM579228 ,
GSM579229 ,
GSM579230 ,
GSM579231 ,
GSM579232 ,
GSM579233 ,
GSM579234 ,
GSM579235 ,
GSM579236 ,
GSM579237 ,
GSM579238 ,
GSM579239 ,
GSM579240 ,
GSM579241 ,
GSM579242 ,
GSM579243 ,
GSM579244 ,
GSM579245 ,
GSM579246 ,
GSM579247 ,
GSM579248 ,
GSM579249 ,
GSM579250 ,
GSM579251 ,
GSM579252 ,
GSM579253 ,
GSM579254 ,
GSM579255 ,
GSM579256 ,
GSM579257 ,
GSM579258 ,
GSM579259 ,
GSM579260 ,
GSM579261 ,
GSM579262 ,
GSM579263 ,
GSM579264 ,
GSM579265 ,
GSM579266 ,
GSM579267 ,
GSM579268 ,
GSM579269 ,
GSM579270 ,
GSM579271 ,
GSM579272 ,
GSM579273 ,
GSM579274 ,
GSM579275 ,
GSM579276 ,
GSM579277 ,
GSM579278 ,
GSM579279 ,
GSM579280 ,
GSM579281 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here
Series (37)
GSE3603
Microarray analysis of in vivo inhibition of mir-122 with an antisense oligonucleotide.
GSE4221
Wildtype Mouse Hypothalamus Cerebellum Fed Fast
GSE5331
Radiation-induced genes expressed in two murine tumors.
GSE5358
p400/mDomino-deficient mouse embryo proper
GSE6113
Kidney Expression Profiles MT
GSE6643
Effect of forced uncoupling protein-1 expression on 3T3-L1 adipocyte gene expression
GSE7006
Comparison of infrarenal and suprarenal sections of mouse ApoE-/- abdominal aorta
GSE8806
Pioglitazone treatment of Lethal Yellow mice
GSE10312
Impact of Developmental Lead Exposure on Splenic Factors
GSE11321
Gene Expression Differences in p53-Deficient Day 8.5 Mouse Embryos
GSE11547
Hyperthermia and p53 effects on global gene expressions
GSE11629
Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.
GSE11719
Comparison of gene expression induced in hearts excised from mice 24 or 48 hours after DMA or DMSO (vehicle) treatment.
GSE11756
Comparison of primary MEF vs HRasV12 + Twist transformed MEF
GSE11785
Control of gene expression by Ott1/RBM15 protein
GSE12425
Dox-regulated Notch4 overexpression in mouse ES cells redirects hemagioblasts to a cardiac fate.
GSE13935
Gene expression in pylorus stomach tissue in Bapx1 (Nkx3.2) deficient mice
GSE14624
Neurosphere cultures transfected with nonsense & miRNA-335 knockout reagents
GSE14937
Altered ovarian gene expression in the lethal yellow mouse
GSE15362
Radiation-induced genes expressed in six murine tumors.
GSE15815
Src kinase Induces Tumor Formation in the cSRC C57BL/6 Mouse
GSE16699
Sip1 regulates sequential fate decisions through feedback signalling from postmitotic neurons to progenitor cells.
GSE16847
Whole mouse genome expression analysis of host responses in Citrobacter rodentium infection
GSE18519
Analysis of gene expression profiles in primary embryonic fibroblasts deficient for the Ing1 locus
GSE20172
Transgenic mice carrying the human PLN gene
GSE23628
Sleep Deprivation and Recovery Sleep for 7 Regions of Mouse Brain.
GSE23752
Induced overexpression of Pdx1 and Ngn3 in a mouse ES cell-derived endoderm population induces pancreatic differentiation
GSE25403
Genome-wide gene expression analysis in mouse embryonic stem cells
GSE25974
Gene expression-based analysis of neural tube closure for the posterior neuropore of Fkbp8 embryos at E9.5
GSE25975
Gene expression-based analysis of neural tube closure for the posterior neuropore of Splotch embryos at E9.5
GSE25983
Gene expression-based analysis of neural tube closure for the posterior neuropore
GSE27277
Effect of Pro- and anti-inflammatory lipids in intracellular survival and killing of mycobacteria
GSE29444
Global gene expression of chemical carcinogen (N-methyl-N-nitrosourea), Helicobacter pylori infection, and high-salt diet-treated mouse gastric mucosa
GSE33968
Gene expression analysis of hemizygous or heterozygous KIT exon 11 deletions NIH3T3 infected cells
GSE34896
Muscle specific proteasome deficient mice
GSE86093
Cxcl1 antagonist on UVB-induced skin inflammation leading to inhibitory effects on photo-skin tumorigensis in Xeroderma pigmentosum type A deficient mice
GSE100104
Myocardial gene expression in mice with cardiac-restricted knockout of COP9 signalosome subunit 8 (CSN8)
Relations
Affiliated with
GPL16865
Data table header descriptions
ID
LOGICAL_ROW
The logical row position of the spot.
LOGICAL_COL
The logical column position of the spot.
PROBE_NAME
The unique probe identifier. Each Probe Name is specific for a given oligonucleotide probe and is the primary identifier.
PROBE_TYPE
A classifier indicating the functional role of the oligonucleotide probe.
PUB_PROBE_TARGETS
A classifier describing the oligonucleotide probe to target relationship. SINGLE - the oligo uniquely targets a single transcript in the public domain. MULTIPLE - the oligo targets more than one transcript in the public domain. DUPLICATE - more than one oligo exists on the bioarray that target the same transcript.
SPOT_ID
An identifier for oligonucleotide probes that do not have a corresponding public reference.
GB_LIST
NCBI GenBank accession numbers. Multiple accessions are listed for probes having more than one target transcript (the first accession in the list is the primary accession assigned to the target sequence)
GI_LIST
NCBI GenBank GI numbers. Multiple GI numbers are listed for probes having more than one target transcript (the first GI number in the list is the primary GI assigned to the target sequence)
Data table
ID
LOGICAL_ROW
LOGICAL_COL
PROBE_NAME
PROBE_TYPE
PUB_PROBE_TARGETS
SPOT_ID
GB_LIST
GI_LIST
1001
1
1
GE200017
FIDUCIAL
CONTROL
-- FID CTRL: PCTRL17
1002
1
2
GE1488331
DISCOVERY
SINGLE
NM_207255.1
46402262
1003
1
3
GE1461340
DISCOVERY
SINGLE
-- NP DISC: CODELINK UNIQUE
1004
1
4
GE1415502
DISCOVERY
SINGLE
AK080548.1
26099320
1005
1
5
GE1560236
DISCOVERY
SINGLE
BM115361.1
17078379
1006
1
6
GE1557210
DISCOVERY
SINGLE
AK015221.1
12853475
1007
1
7
GE200017
FIDUCIAL
CONTROL
-- FID CTRL: PCTRL17
1008
1
8
GE200018
FIDUCIAL
CONTROL
-- FID CTRL: PCTRL18
1009
1
9
GE1406184
MASK
SINGLE
-- MASK
1010
1
10
GE1409715
DISCOVERY
SINGLE
BX636603.1
33616478
1011
1
11
GE1417824
MASK
SINGLE
-- MASK
1012
1
12
GE1572262
DISCOVERY
SINGLE
AK047664.1
26092339
1013
1
13
GE1537512
DISCOVERY
SINGLE
CA879667.1
27331216
1014
1
14
GE200018
FIDUCIAL
CONTROL
-- FID CTRL: PCTRL18
1015
1
15
GE200019
FIDUCIAL
CONTROL
-- FID CTRL: PCTRL19
1016
1
16
GE1446262
MASK
SINGLE
-- MASK
1017
1
17
GE1388074
DISCOVERY
SINGLE
BF160755.1
11040862
1018
1
18
GE1425706
DISCOVERY
SINGLE
BC041149.1
27370741
1019
1
19
GE1514303
DISCOVERY
SINGLE
AA822155.1
2892023
1020
1
20
GE1575536
DISCOVERY
SINGLE
BC048760.1
28908263
Total number of rows: 45920 Table truncated, full table size 2656 Kbytes .
Supplementary data files not provided