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Platform GPL29663 Query DataSets for GPL29663
Status Public on Jan 29, 2021
Title Agilent-079797 Daphnia magna DGC v2 (Feature ID)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Daphnia magna
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description versión, similar to v1, but including the replicate prbes

Arrays of this design have barcodes that begin with 16079797 or 2579797.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jan 28, 2021
Last update date Jan 29, 2021
Contact name Bruno Campos
E-mail(s) brunocampus@gmail.com
Organization name IDAEA-CSIC
Department Environmental Chemistry
Street address jordi girona, 18, 18
City Barcelona
ZIP/Postal code 08034
Country Spain
 
Samples (48) GSM5048839, GSM5048840, GSM5048841, GSM5048842, GSM5048843, GSM5048844 
Series (1)
GSE165726 Transcriptomic respponses in the gut in Daphnia magna across toxic chemicals that inhibit feeding and food limiting conditions

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE
1 192 328 GE_BrightCorner GE_BrightCorner pos
2 192 326 DarkCorner DarkCorner pos
3 192 324 DarkCorner DarkCorner pos
4 192 322 CUST_24718_PI429715507 CUST_24718_PI429715507 FALSE unmapped GGTGTTACCACTATTGTGATTCCATCATCACCAATAGAAAGTTGCTGATTTTCATCATTT
5 192 320 CUST_102497_PI429715507 CUST_102497_PI429715507 FALSE unmapped ACACGTAGTGCTGTAGCAGCAAGCGAATGTGCATCAAGGACAAGTTTTGTTTTCAAGCAG
6 192 318 CUST_30675_PI429715507 CUST_30675_PI429715507 FALSE unmapped AAATTGCGGTGTGTAATAGCAAAAGTTTGTCGGCAAATGTCGAAAACAGGAGCGACCCCA
7 192 316 CUST_5292_PI429715507 CUST_5292_PI429715507 FALSE unmapped GTCCCTATTTGAAGAGGGTATACCAAAAAACTAATTTGGAACGTCTAAACTAACTGCAAT
8 192 314 CUST_42035_PI429715507 CUST_42035_PI429715507 FALSE unmapped GCAACGTTCCACTGAATCTGAATCTTTTCCAGCTAAATAGTTTCCAAATTGAAATGCAAT
9 192 312 CUST_43082_PI429715507 CUST_43082_PI429715507 FALSE unmapped ATATGTTTTCGTGGATATTTGTTGCTCGATCGCCTTCTGACCATTCCTTACTGATAGAAC
10 192 310 CUST_67022_PI429715507 CUST_67022_PI429715507 FALSE unmapped GCCTTTCTGGCCAGCAATGTTCATCTGGAGCCGTCTTGCTCGTCTCGAATCTCAACGAGG
11 192 308 CUST_8462_PI429715507 CUST_8462_PI429715507 FALSE unmapped GTAATCAATTACCGTGACGAAGAAATGTTGAACTAGCTTTTGGGAAGTTTAAGGAAGTAA
12 192 306 CUST_154391_PI429715507 CUST_154391_PI429715507 FALSE unmapped GCGAATTAATTGAAATGCTCTTTGCCTGATGCTGTTTTATGTCTAGCATGATGTAAAAAG
13 192 304 CUST_18038_PI429715507 CUST_18038_PI429715507 FALSE unmapped GCTTTGGTGTTTGTTGTTCTTGCCCTTGTACTGACGGGATACGACACATGATTGAAAAAA
14 192 302 CUST_15353_PI429715507 CUST_15353_PI429715507 FALSE unmapped GAAAGACTAAGAGAACAATCAAGGCCTGTTTATATAAAATCTATAGATCGTGAATCTGGG
15 192 300 CUST_12722_PI429715507 CUST_12722_PI429715507 FALSE unmapped AGGCTTTCCTGGCTATCTTTTATCTCATCCTATTGCTTGATATTTCGGGTTTTTATAAAG
16 192 298 CUST_53582_PI429715507 CUST_53582_PI429715507 FALSE unmapped TGAAAATGACTGGCTTACCTGCAGACATATCCACAAAGCCAAGCGCTCATAACTGGACTA
17 192 296 CUST_147715_PI429715507 CUST_147715_PI429715507 FALSE unmapped AGTCACTTTCAAATAATCATTGACATTAAGAGTATACGTTAGTGGCAGGCAGTATACGTC
18 192 294 CUST_75471_PI429715507 CUST_75471_PI429715507 FALSE unmapped GCAATACCACGATTATTTCTAATGACGGATCTTTTGACTGAAATTGTTTTGCCCACATTA
19 192 292 CUST_21747_PI429715507 CUST_21747_PI429715507 FALSE unmapped CTAACACTATGTAACTAGCTTTGTCTCATATTTCCATCATTCATTGATCCAACTGTATGC
20 192 290 CUST_99331_PI429715507 CUST_99331_PI429715507 FALSE unmapped CGTCGTCATCGGTGTAATTTTGTTTACTTCATTTTTTAAACACGATGTCACATAACTAGC

Total number of rows: 62976

Table truncated, full table size 8792 Kbytes.




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Supplementary file Size Download File type/resource
GPL29663_079797_D_GEO_20151120.txt.gz 2.0 Mb (ftp)(http) TXT

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