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Platform GPL3037 Query DataSets for GPL3037
Status Public on Nov 02, 2005
Title NIEHS Human Operon Oligo/ToxChip Hybrid V 1.0
Technology type mixed spotted oligonucleotide/cDNA
Distribution non-commercial
Organism Homo sapiens
Manufacturer NIEHS
Manufacture protocol http://dir.niehs.nih.gov/microarray/methods.htm
 
Description This array was developed in-house at NIEHS, and used for gene expression profiling experiments. A complete listing of the genes on this chip is available at the following Web site: http://dir.niehs.nih.gov/microarray/chips.htm
Oligos for spotting were purchased from the Operon Human Genome Oligo Set V1.1 and cDNAs were prepared according to DeRisi et al., 1996, Nat. Genet. 14, 457-460. The PCR products from the cDNAs and the oligos were spotted onto poly-L-lysine-coated glass slides using a modified, robotic DNA arrayer (Beecher Instruments, Bethesda MD).
 
Web link http://dir.niehs.nih.gov/microarray/home.htm
Contributor(s) Tucker J, Bushel PR, Paules RS
Submission date Nov 01, 2005
Last update date Dec 09, 2005
Contact name Pierre Robert Bushel
E-mail(s) bushel@niehs.nih.gov
Phone 919-316-4564
Organization name NIEHS
Department Biostatistics and Computational Biology Branch
Lab Bioinformatics
Street address P.O. Box 12233
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Samples (4) GSM81465, GSM81466, GSM81467, GSM81468
Series (1)
GSE3548 Gene expression alteration in human fibroblast cells after folate depletion

Data table header descriptions
ID
PenAt Pen position (left to right)
RowAt Within each subarray (pen), row offset
ColumnAt Within each subarray (pen), column offset
CloneTitle Description of the feature
CloneID ID of feature on array (xxxxx = Spotting Buffer;yyyyy=New spotting buffer; EEEEE=empty well)
PlatePos Plate/row/column of source plate
GB_ACC
SPOT_ID

Data table
ID PenAt RowAt ColumnAt CloneTitle CloneID PlatePos GB_ACC SPOT_ID
1 1 1 1 CASP8 associated protein 2 NM_012115 1A01 NM_012115
2 2 1 1 15 kDa selenoprotein AF051894 2A01 AF051894
3 3 1 1 tumor suppressing subtransferable candidate 3 AF035444 1A02 AF035444
4 4 1 1 N-acetyltransferase 1 (arylamine N-acetyltransferase) D90041 2A02 D90041
5 1 1 3 peflin AK001420 1A03 AK001420
6 2 1 3 5-methyltetrahydrofolate-homocysteine methyltransferase U73338 2A03 U73338
7 3 1 3 fumarylacetoacetate M55150 1A04 M55150
8 4 1 3 troponin I, cardiac X90780 2A04 X90780
9 1 1 5 mitogen-activated protein kinase kinase kinase 7 AL121964 1A05 AL121964
10 2 1 5 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase, 68kD) X52104 2A05 X52104
11 3 1 5 antioxidant enzyme B166 NM_012094 1A06 NM_012094
12 4 1 5 ribosomal protein S27a S79522 2A06 S79522
13 1 1 7 programmed cell death 6 AK001917 1A07 AK001917
14 2 1 7 polymerase (DNA directed), epsilon L09561 2A07 L09561
15 3 1 7 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) AF135794 1A08 AF135794
16 4 1 7 ClpX (caseinolytic protease X, E. coli) homolog AJ006267 2A08 AJ006267
17 1 1 9 nuclear factor of activated T-cells, cytoplasmic 2 U43342 1A09 U43342
18 2 1 9 poly (ADP-ribose) glycohydrolase NM_003631 2A09 NM_003631
19 3 1 9 non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase) AF067724 1A10 AF067724
20 4 1 9 ribosomal protein S6 kinase, 52kD, polypeptide 1 NM_012424 2A10 NM_012424

Total number of rows: 20000

Table truncated, full table size 1523 Kbytes.




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