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Platform GPL32014 Query DataSets for GPL32014
Status Public on Mar 06, 2022
Title Agilent-045666 JFS
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Trypanosoma cruzi
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Tcruzi clone Cl Brener array

Arrays of this design have barcodes that begin with 16045666 or 2545666.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Mar 03, 2022
Last update date Mar 06, 2022
Contact name José Franco Da Silveira
E-mail(s) jose.franco@unifesp.br
Phone +55 (11) 98886-9796
Organization name Universidade Federal de São Paulo
Department Departamento de Microbiologia, Imunologia e Parasitologia
Lab Biologia Molecular de Trypanosoma cruzi
Street address Rua Botucatu, 862
City São Paulo
State/province São Paulo
ZIP/Postal code 04023-062
Country Brazil
 
Samples (20) GSM5931528, GSM5931529, GSM5931530, GSM5931531, GSM7159190, GSM7159191 
Series (2)
GSE197870 aCGH Trypanosoma cruzi G vs D11.
GSE229354 Trypanosoma cruzi CLB vs Trypanosoma rangeli and Trypanosoma conorhini

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description

Data table
ID COL ROW SPOT_ID CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION
1 192 328 DarkCorner pos
2 192 326 DarkCorner pos
3 192 324 DarkCorner pos
4 192 322 JFS3_001654 FALSE TcChr41P:000958918-000960327 Chr41P:960172-960232 TcChr41P:960172-960232
5 192 320 JFS2_003015 FALSE Tcchr20S:000000001-000656794 chr20S:534949-535009 Tcchr20S:534949-535009
6 192 318 JFS4_002560 FALSE Tcchr36P:000064381-000066993 chr36P:66389-66449 Tcchr36P:66389-66449
7 192 316 JFS2_011384 FALSE Tcchr30S:000000001-000863877 chr30S:692328-692388 Tcchr30S:692328-692388
8 192 314 JFS2_012190 FALSE Tcchr39P:000000001-001854099 chr39P:1265624-1265684 Tcchr39P:1265624-1265684
9 192 312 JFS2_009694 FALSE Tcchr39S:000000001-001854099 chr39S:1062625-1062685 Tcchr39S:1062625-1062685
10 192 310 JFS2_015117 FALSE Tcchr41S:000000001-002371731 chr41S:55095-55155 Tcchr41S:55095-55155
11 192 308 JFS2_037561 FALSE Tcchr13P:000000001-000558359 chr13P:260819-260879 Tcchr13P:260819-260879
12 192 306 JFS2_027378 FALSE Tcchr4P:000000001-000200396 chr4P:190536-190596 Tcchr4P:190536-190596
13 192 304 JFS2_002295 FALSE Tcchr15P:000000001-000612848 chr15P:198771-198831 Tcchr15P:198771-198831
14 192 302 JFS2_033691 FALSE Tcchr36S:000000001-001180739 chr36S:392221-392281 Tcchr36S:392221-392281
15 192 300 JFS2_041770 FALSE Tcchr26S:000000001-000801417 chr26S:145272-145332 Tcchr26S:145272-145332
16 192 298 JFS2_019124 FALSE Tcchr28P:000000001-000853228 chr28P:520627-520687 Tcchr28P:520627-520687
17 192 296 JFS2_028397 FALSE Tcchr31S:000000001-000947468 chr31S:852796-852856 Tcchr31S:852796-852856
18 192 294 JFS2_032385 FALSE Tcchr36P:000000001-001180739 chr36P:623212-623272 Tcchr36P:623212-623272
19 192 292 JFS2_024658 FALSE Tcchr35P:000000001-001186941 chr35P:542090-542150 Tcchr35P:542090-542150
20 192 290 JFS2_032716 FALSE Tcchr36P:000000001-001180739 chr36P:1034461-1034521 Tcchr36P:1034461-1034521

Total number of rows: 62976

Table truncated, full table size 6302 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL32014_JFS_045666_D_20130717.gal.gz 9.9 Mb (ftp)(http) GAL
GPL32014_JFS_045666_D_BED_20130717.bed.gz 528.6 Kb (ftp)(http) BED
GPL32014_JFS_045666_D_DNABack_BCLeft_20130717.tdt.txt.gz 1.8 Mb (ftp)(http) TXT
GPL32014_JFS_045666_D_DNAFront_BCBottom_20130717.tdt.txt.gz 1.8 Mb (ftp)(http) TXT
GPL32014_JFS_045666_D_F_20130717.xml.gz 4.3 Mb (ftp)(http) XML
GPL32014_JFS_045666_D_Fasta_20130717.txt.gz 1.2 Mb (ftp)(http) TXT
GPL32014_JFS_045666_D_GEO_20130717.txt.gz 1.5 Mb (ftp)(http) TXT
GPL32014_JFS_045666_D_GeneList_20130717.txt.gz 752.9 Kb (ftp)(http) TXT
GPL32014_JFS_045666_D_NormalizedProbes_20130717.txt.gz (ftp)(http) TXT
GPL32014_JFS_045666_D_SequenceList_20130717.txt.gz 1.2 Mb (ftp)(http) TXT

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