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| Status |
Public on Mar 06, 2022 |
| Title |
aCGH Trypanosoma cruzi G vs D11. |
| Organism |
Trypanosoma cruzi |
| Experiment type |
Genome variation profiling by array
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| Summary |
Comparative genomic analysis of Trypanosoma cruzi G with Trypanosoma cruzi D11.
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| Overall design |
The 8x60K array was designed and produced by Agilent (Agilent Technologies, Santa Clara, CA,US) based on the T. cruzi clone CLB genome, release 9, available in TriTrypDB. Two groups of probes totaling 48,787 probes covering all the in silico chromosomes were selected. The first group of probes covered all the chromosomes, including coding and non-coding regions, with an average of one probe every 1.2 kb to give a total of 44,860 probes. To design the second group, we selected 422 specific chromosome markers (i.e., single copy genes present only in the homologous chromosomes). In order to obtain a higher coverage with these markers, probe density was increased to one probe every 120 bp.
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| Contributor(s) |
Cortez DR, Marini MM, Lima FM, Luís Reis-Cunha J, Castanheira Bartholomeu D, Rios Villacis RA, Rogatto SR, Costa-Martins AG, Marchiano FS, do Carmo RA, da Silveira JF |
| Citation(s) |
35402315 |
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| Submission date |
Mar 03, 2022 |
| Last update date |
Apr 19, 2022 |
| Contact name |
José Franco Da Silveira |
| E-mail(s) |
jose.franco@unifesp.br
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| Phone |
+55 (11) 98886-9796
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| Organization name |
Universidade Federal de São Paulo
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| Department |
Departamento de Microbiologia, Imunologia e Parasitologia
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| Lab |
Biologia Molecular de Trypanosoma cruzi
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| Street address |
Rua Botucatu, 862
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| City |
São Paulo |
| State/province |
São Paulo |
| ZIP/Postal code |
04023-062 |
| Country |
Brazil |
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| Platforms (1) |
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| Samples (4)
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| Relations |
| BioProject |
PRJNA812535 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE197870_RAW.tar |
69.3 Mb |
(http)(custom) |
TAR (of TXT) |
| Processed data included within Sample table |
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