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Platform GPL32737 Query DataSets for GPL32737
Status Public on Oct 11, 2022
Title Agilent-081421 Horse_60K_2016_01_22 021322 [Probe name version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Equus caballus
Manufacturer Agilent Technologies
Manufacture protocol See manufacturer's web site at: http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16081421 or 2581421.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Probe Name.
 
Submission date Oct 11, 2022
Last update date Oct 11, 2022
Contact name GEO admin
E-mail(s) geo@ncbi.nlm.nih.gov
Organization name NCBI/NLM/NIH
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (45) GSM6626339, GSM6626340, GSM6626342, GSM6626343, GSM6626344, GSM6626345 
Series (1)
GSE215200 Transcriptomic signature related to welfare of horses housed in individual boxes

Data table header descriptions
ID Probe Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeq Accession
GB_ACC GenBank and RefSeq Accessions
ENTREZ_GENE_ID Entrez Gene ID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UniGene ID
ENSEMBL_ID Ensembl ID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE REFSEQ GB_ACC ENTREZ_GENE_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE
A_69_P000001 A_69_P000001 FALSE NM_001081867 NM_001081867 100033940 ANXA1 annexin A1 Eca.12920 ENSECAT00000017244 ref|NM_001081867|ens|ENSECAT00000017244|gb|AF544227|gb|JL616399 chr23:8360153-8360094 "Equus caballus annexin A1 (ANXA1), mRNA [NM_001081867]" CTGTGGAAGAGACTAAACATTCCTTTCACGCTCTCAAGCATTTTCATCAGAAGACTTTTT
A_69_P000002 A_69_P000002 FALSE NM_001081867 NM_001081867 100033940 ANXA1 annexin A1 Eca.12920 ENSECAT00000017244 ref|NM_001081867|ens|ENSECAT00000017244|gb|AF544227|gb|HQ890122 chr23:8360875-8360165 "Equus caballus annexin A1 (ANXA1), mRNA [NM_001081867]" TATGGTATCTCACTCTGCCAAGCCATCCTGGATGAAACCAAGGGAGATTACGAAAAGATC
A_69_P000006 A_69_P000006 FALSE NM_001081779 NM_001081779 100009680 HTR1B "5-hydroxytryptamine (serotonin) receptor 1B, G protein-coupled" Eca.12472 ENSECAT00000000581 ref|NM_001081779|gb|AB267710|gb|AB264326|ens|ENSECAT00000000581 chr10:26565907-26565848 "Equus caballus 5-hydroxytryptamine (serotonin) receptor 1B, G protein-coupled (HTR1B), mRNA [NM_001081779]" ATCTATGTGGAAGCCCGCTCCCGGATTTTGAAACAGACGCCCAATAGGACCGGCAAGCGT
A_69_P000011 A_69_P000011 FALSE NM_001081816 NM_001081816 100033831 IL1R2 "interleukin 1 receptor, type II" Eca.12589 ENSECAT00000000377 ref|NM_001081816|ens|ENSECAT00000000377|gb|AB033415|ref|XM_005599764 chr15:4173856-4173797 "Equus caballus interleukin-1 receptor type II (IL-1RII), mRNA [NM_001081816]" AAAGCGTATGGTTTGACTGCATTAAAGATTGAGCGTCAAGTTTTTCAATCTTATCCAAGT
A_69_P000016 A_69_P000016 FALSE NM_001081917 NM_001081917 100034104 PTH parathyroid hormone Eca.12575 ENSECAT00000020748 ref|NM_001081917|ens|ENSECAT00000020748|gb|DQ399295 chr7:70070825-70070766 "Equus caballus parathyroid hormone (PTH), mRNA [NM_001081917]" GCAGACAAAGCTGATGTGGATGTGTTAAGTAAAACTAAATCCCAGTGAAAACAGATAGGA
A_69_P000017 A_69_P000017 FALSE NM_001081917 NM_001081917 100034104 PTH parathyroid hormone Eca.12575 ENSECAT00000020748 ref|NM_001081917|ens|ENSECAT00000020748|gb|DQ399295 chr7:70070848-70070789 "Equus caballus parathyroid hormone (PTH), mRNA [NM_001081917]" GCCATCAAAAAAGTCTTGGAGAAGCAGACAAAGCTGATGTGGATGTGTTAAGTAAAACTA
A_69_P000018 A_69_P000018 FALSE NM_001081917 NM_001081917 100034104 PTH parathyroid hormone Eca.12575 ENSECAT00000020748 ref|NM_001081917|ens|ENSECAT00000020748|gb|DQ399295 chr7:70070868-70070809 "Equus caballus parathyroid hormone (PTH), mRNA [NM_001081917]" AGACAATGTGCTGATTGAGAGCCATCAAAAAAGTCTTGGAGAAGCAGACAAAGCTGATGT
A_69_P000019 A_69_P000019 FALSE NM_001081917 NM_001081917 100034104 PTH parathyroid hormone Eca.12575 ENSECAT00000020748 ref|NM_001081917|ens|ENSECAT00000020748|gb|DQ399295 chr7:70070888-70070829 "Equus caballus parathyroid hormone (PTH), mRNA [NM_001081917]" CAGAGGCCTCGAAAAAAGGAAGACAATGTGCTGATTGAGAGCCATCAAAAAAGTCTTGGA
A_69_P000021 A_69_P000021 FALSE NM_001123379 NM_001123379 100050730 SOCS3 suppressor of cytokine signaling 3 Eca.16240 ENSECAT00000028931 ref|NM_001123379|ens|ENSECAT00000028931|ens|ENSECAT00000001789|gb|EU554424 chr11:2992064-2992123 "Equus caballus suppressor of cytokine signaling 3 (SOCS3), mRNA [NM_001123379]" ACATCTCTGTCGGAAGACCGTCAACGGCCACCTGGACTCCTATGAGAAAGTCACCCAGCT
A_69_P000026 A_69_P000026 FALSE NM_001081920 NM_001081920 100034112 BPIFA2 "BPI fold containing family A, member 2" Eca.12494 ENSECAT00000000284 ref|NM_001081920|ens|ENSECAT00000000284|gb|DQ788676 chr22:23885587-23885646 "Equus caballus BPI fold containing family A, member 2 (BPIFA2), mRNA [NM_001081920]" TATAAGTTCTTTTGATGACCTCATCAGTAAACTTGAGCAGGGGATCCAGCTGCCGTTAGA
A_69_P000027 A_69_P000027 FALSE NM_001081920 NM_001081920 100034112 BPIFA2 "BPI fold containing family A, member 2" Eca.12494 ENSECAT00000000284 ref|NM_001081920|ens|ENSECAT00000000284|gb|DQ788676 chr22:23885567-23885626 "Equus caballus BPI fold containing family A, member 2 (BPIFA2), mRNA [NM_001081920]" GTCTTCCTCCACAGCCTGGATATAAGTTCTTTTGATGACCTCATCAGTAAACTTGAGCAG
A_69_P000031 A_69_P000031 FALSE DQ442269 100054320 ANXA2 annexin A2 Eca.122 gb|DQ442269 chr1:128723567-128723625 "Equus caballus annexin A2 mRNA, complete cds. [DQ442269]" CTCCTTTGCCTCTTGTGTACTGTGTCGTAAACAGATGAATAAACTGAGTTTTTACTTTTG
A_69_P000032 A_69_P000032 FALSE NM_001123380 NM_001123380 100054320 ANXA2 annexin A2 Eca.122 ref|NM_001123380|gb|DQ442269|gb|JL616077 chr1:128723508-128723566 "Equus caballus annexin A2 (ANXA2), mRNA [NM_001123380]" CCTTTTAGCCAAAGAAATGAACATTCCAAGGAGTTGGCAGTGAAATTCTATGATGTGAGA
A_69_P000036 A_69_P000036 FALSE NM_001081842 NM_001081842 100033888 CASP1 "caspase 1, apoptosis-related cysteine peptidase" Eca.13025 ENSECAT00000026255 ref|NM_001081842|ens|ENSECAT00000026255|gb|AF090119 chr7:11248855-11248330 "Equus caballus caspase 1, apoptosis-related cysteine peptidase (CASP1), mRNA [NM_001081842]" AAATTTTCCGAAAGGTCCGATTATCATTTGAGTTGCCAGATGCTAGGGCACAGATGCCCA
A_69_P000041 A_69_P000041 FALSE NM_001123381 NM_001123381 100056062 LOC100056062 MHC class I antigen 9.2 Eca.2445 ENSECAT00000017767 ref|NM_001123381|ref|NM_001082505|ens|ENSECAT00000017767|ens|ENSECAT00000018004 chrUn:93882162-93881968 "Equus caballus MHC class I antigen 9.2 (LOC100056062), mRNA [NM_001123381]" ACGTGCAGACTGCAAACAGTGACAGTGCCCAAGGCTCTGATGCATCTCTCACGCAGAAAG
A_69_P000046 A_69_P000046 FALSE NM_001081894 NM_001081894 100034024 MPZ myelin protein zero Eca.12777 ENSECAT00000009424 ref|NM_001081894|ens|ENSECAT00000009424|gb|AY293741 chrUn:308786662-308786963 "Equus caballus myelin protein zero (MPZ), mRNA [NM_001081894]" ATAGTGGGCAAGACCTCTCAGGTCACACTCTATGTCTTTGAAAAAGTGCCAACTAGGTAC
A_69_P000051 A_69_P000051 FALSE NM_001101650 NM_001101650 100050252 VCAM1 vascular cell adhesion molecule 1 Eca.14427 ENSECAT00000017575 ref|NM_001101650|ens|ENSECAT00000017575|gb|EU057895|ref|XM_005610264 chr5:38439290-38439231 "Equus caballus vascular cell adhesion molecule (VCAM), mRNA [NM_001101650]" AGCCAAAGGAAAACTTTCTGCCTAAAAACTAGGCACTGCCATTGAGATGTGATGGCTGGA
A_69_P000056 A_69_P000056 FALSE NM_001081947 NM_001081947 100049797 SERPINB1 "serpin peptidase inhibitor, clade B (ovalbumin), member 1" Eca.3727 ENSECAT00000010506 ref|NM_001081947|ens|ENSECAT00000010506|gb|M91161|gb|JL616060 chr20:2973409-2973350 "Equus caballus serpin peptidase inhibitor, clade B (ovalbumin), member 1 (SERPINB1), mRNA [NM_001081947]" GCTGCATTTTCTTGCTCCCACAAAGCTGGTATGCTGGTTAATAAAGTTTCCTAAGATTCT
A_69_P000057 A_69_P000057 FALSE NM_001081947 NM_001081947 100049797 SERPINB1 "serpin peptidase inhibitor, clade B (ovalbumin), member 1" Eca.3727 ENSECAT00000010506 ref|NM_001081947|ens|ENSECAT00000010506|gb|M91161|gb|JL616060 chr20:2973439-2973380 "Equus caballus serpin peptidase inhibitor, clade B (ovalbumin), member 1 (SERPINB1), mRNA [NM_001081947]" TTTGTCAAATGTTTGAATGGGGCTGAAAATGCTGCATTTTCTTGCTCCCACAAAGCTGGT
A_69_P000061 A_69_P000061 FALSE NM_001081919 NM_001081919 100034110 HRH1 histamine receptor H1 Eca.12496 ENSECAT00000004410 ref|NM_001081919|ens|ENSECAT00000004410|gb|DQ681103|ref|XM_005600329 chr16:5828596-5828537 "Equus caballus histamine receptor H1 (HRH1), mRNA [NM_001081919]" TACCCTTTGTGCAATGAGAACTTCAAGAAGACGTTCAAGAAAATCCTGCACATTCGCTCC

Total number of rows: 44043

Table truncated, full table size 13360 Kbytes.




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