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Status
Public on Mar 06, 2006
Title
Khodursky Lab E. coli B 4290 ORFs Microarray
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Escherichia coli Manufacturer
Non-commercial
Manufacture protocol
4290 amplified ORFs from primer pairs (from Sigma Genosys) were printed onto glass slides using a 16 tip robotic printer from 384-well microwell plates
Support
glass
Coating
polysine
Description
A microarray with 4405 spot features.
Contributor(s)
Sangurdekar DP , Srienc F , Khodursky AB Submission date
Mar 02, 2006
Last update date
Mar 06, 2006
Contact name
Dipen Sangurdekar
E-mail(s)
dps@genomics.princeton.edu Organization name
Princeton University
Department
Lewis-Sigler Institute for Integrative Genomics
Street address
132 Carl Icahn laboratory, Princeton University
City
Princeton
State/province
NJ
ZIP/Postal code
08544
Country
USA
Samples (203)
GSM99081 , GSM99082 , GSM99083 , GSM99084 , GSM99085 , GSM99086
GSM99087 ,
GSM99088 ,
GSM99089 ,
GSM99090 ,
GSM99091 ,
GSM99092 ,
GSM99093 ,
GSM99094 ,
GSM99095 ,
GSM99096 ,
GSM99097 ,
GSM99098 ,
GSM99099 ,
GSM99100 ,
GSM99101 ,
GSM99102 ,
GSM99103 ,
GSM99104 ,
GSM99105 ,
GSM99106 ,
GSM99107 ,
GSM99108 ,
GSM99109 ,
GSM99110 ,
GSM99111 ,
GSM99112 ,
GSM99113 ,
GSM99114 ,
GSM99115 ,
GSM99116 ,
GSM99117 ,
GSM99118 ,
GSM99119 ,
GSM99120 ,
GSM99121 ,
GSM99122 ,
GSM99123 ,
GSM99124 ,
GSM99125 ,
GSM99126 ,
GSM99127 ,
GSM99128 ,
GSM99129 ,
GSM99130 ,
GSM99131 ,
GSM99132 ,
GSM99133 ,
GSM99134 ,
GSM99135 ,
GSM99136 ,
GSM99137 ,
GSM99138 ,
GSM99139 ,
GSM99140 ,
GSM99141 ,
GSM99142 ,
GSM99143 ,
GSM99144 ,
GSM99145 ,
GSM99146 ,
GSM99147 ,
GSM99148 ,
GSM99149 ,
GSM99150 ,
GSM99151 ,
GSM99152 ,
GSM99153 ,
GSM99154 ,
GSM99155 ,
GSM99156 ,
GSM99157 ,
GSM99158 ,
GSM99159 ,
GSM99160 ,
GSM99161 ,
GSM99162 ,
GSM99163 ,
GSM99164 ,
GSM99165 ,
GSM99166 ,
GSM99167 ,
GSM99168 ,
GSM99169 ,
GSM99170 ,
GSM99171 ,
GSM99172 ,
GSM99173 ,
GSM99174 ,
GSM99175 ,
GSM99176 ,
GSM99177 ,
GSM99178 ,
GSM99179 ,
GSM99180 ,
GSM99181 ,
GSM99182 ,
GSM99183 ,
GSM99184 ,
GSM99185 ,
GSM99186 ,
GSM99187 ,
GSM99188 ,
GSM99189 ,
GSM99190 ,
GSM99191 ,
GSM99192 ,
GSM99193 ,
GSM99194 ,
GSM99195 ,
GSM99196 ,
GSM99197 ,
GSM99198 ,
GSM99199 ,
GSM99200 ,
GSM99201 ,
GSM99202 ,
GSM99203 ,
GSM99204 ,
GSM99205 ,
GSM99206 ,
GSM99207 ,
GSM99208 ,
GSM99209 ,
GSM99210 ,
GSM99211 ,
GSM99212 ,
GSM99213 ,
GSM99214 ,
GSM99215 ,
GSM99216 ,
GSM99636 ,
GSM99637 ,
GSM99638 ,
GSM99639 ,
GSM386765 ,
GSM386766 ,
GSM386767 ,
GSM386768 ,
GSM386769 ,
GSM386770 ,
GSM386771 ,
GSM386772 ,
GSM386773 ,
GSM386774 ,
GSM386775 ,
GSM386776 ,
GSM386777 ,
GSM386778 ,
GSM386779 ,
GSM386780 ,
GSM386781 ,
GSM386782 ,
GSM386783 ,
GSM386784 ,
GSM386785 ,
GSM386786 ,
GSM496909 ,
GSM496910 ,
GSM496911 ,
GSM496912 ,
GSM496913 ,
GSM496914 ,
GSM496915 ,
GSM496916 ,
GSM496917 ,
GSM496918 ,
GSM496919 ,
GSM496920 ,
GSM496921 ,
GSM496922 ,
GSM496923 ,
GSM807130 ,
GSM807131 ,
GSM807132 ,
GSM807133 ,
GSM807134 ,
GSM807135 ,
GSM807136 ,
GSM807137 ,
GSM807138 ,
GSM807139 ,
GSM807140 ,
GSM807141 ,
GSM807142 ,
GSM807143 ,
GSM807144 ,
GSM807145 ,
GSM807146 ,
GSM807147 ,
GSM807148 ,
GSM807149 ,
GSM807150 ,
GSM807151 ,
GSM807152 ,
GSM807153 ,
GSM807154 ,
GSM807155 Series (28)
GSE4357 Ampicillin treatment (100 ug/ml) in M9 + glucose, timecourse
GSE4358 Ecoli_CaCl2 wash vs before wash, timecourse
GSE4359 Recovery from stationary phase in LB + glucose at OD 0.4
GSE4360 Indol-acrylate (10 ug/ml) treatment in Bonner-Vogel, timecourse
GSE4361 Indol-acrylate (15 ug/ml) treatment in Bonner-Vogel, timecourse
GSE4362 Kanamycin treatment (100 ug/ml) in M9 + glucose, timecourse
GSE4363 Recovery from stationary phase in LB + 0.2 % glucose
GSE4364 Recovery from stationary phase in LB + glucose at OD 1.0
GSE4365 Balanced growth of Ecoli MG1655/pTrc99a(NOX+) at different growth rates
GSE4366 Balanced growth of Ecoli MG1655/pTrc99a(NOX-) at different growth rates
GSE4367 Ecoli C600 Norfloxacin treatment (50 ug/ml) in LB, timecourse
GSE4368 Ecoli C600 (gyrArparCr) Norfloxacin treatment (15 ug/ml) in LB, timecourse
GSE4369 Ecoli C600 (gyrArparCr) Norfloxacin treatment (50 ug/ml) in LB, timecourse
GSE4370 Recovery from stationary phase in 10 mM Na-P (pH 7.5)
GSE4371 Recovery from stationary phase in 10 mM Na-P (pH 7.5) + 0.2 % glucose
GSE4372 Ecoli W3110_0.01 M sodium azide treatment vs untreated, timecourse
GSE4373 Anaerobic growth in M9 + glucose, genomic DNA reference
GSE4374 Anaerobic growth in M9 + glucose + fumarate,genomic DNA reference
GSE4375 Anaerobic growth in M9 + glucose
GSE4376 Anaerobic growth in M9 + glucose + fumarate
GSE4377 Gamma treatment in Davis, timecourse
GSE4378 Novobiocin treatment in LB
GSE4379 Ecoli DH5alpha, pUC overexpression in LB + Amp vs no pUC
GSE4380 Stationary phase in LB, genomic DNA reference
GSE4417 Temperature upshift in E coli gyrBT strain, time series
GSE15409 Amino acid/Nucleotide perturbation in Escherichia coli
GSE19879 Thymine starvation and limitation in Escherichia coli thyA- cells
GSE32562 Trimethoprim response in Escherichia coli in bacteriostatic and bactericidal conditions
Data table header descriptions ID ORF Open Reading Frame identifier
GENE_SYMBOL Name of the gene represented by the sequence in the spot/feature
GENE_DESC Description of the gene represented by the sequence in the spot/feature
Data table ID ORF GENE_SYMBOL GENE_DESC 1
B0001 thrL
thr operon leader peptide
2
B0002 thrA
aspartokinase I, homoserine dehydrogenase I
3
B0003 thrB
homoserine kinase
4
B0004 thrC
threonine synthase
5
B0005 b0005
orf, hypothetical protein
6
B0006 yaaA
orf, hypothetical protein
7
B0007 yaaJ
inner membrane transport protein
8
B0008 talB
transaldolase B
9
B0009 mog
required for the efficient incorporation of molybdate into molybdoproteins
10
B0010 yaaH
orf, hypothetical protein
11
B0011 b0011
putative oxidoreductase
12
B0012 htgA
positive regulator for sigma 32 heat shock promoters
13
B0013 yaaI
orf, hypothetical protein
14
B0014 dnaK
chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins
15
B0015 dnaJ
chaperone with DnaK; heat shock protein
16
B0016 yi81_1
IS186 hypothetical protein
17
B0017 yi82_1
IS186 and IS421 hypothetical protein
18
B0018 gef
Gef protein interferes with membrane function when in excess
19
B0019 nhaA
Na+/H antiporter, pH dependent
20
B0020 nhaR
transcriptional activator of nhaA
4405 216 Kbytes .Supplementary data files not provided
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