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Status
Public on Mar 08, 2006
Title
Galbraith Laboratory Operon Long Oligonucleotide Microarray version 3.0 (ATv304.02.Z)
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Arabidopsis thaliana Manufacturer
The Galbraith Lab, University of Arizona
Manufacture protocol
GeneMachines Omnigrid 300
Support
glass
Coating
aminosilane
Description
This oligonucleotide array is produced from the Operon Version 3.0 Array-Ready Oligo set (AROS), which comprises 29,110 70-mer oligonucleotides representing 26,173 protein-coding genes, and 28,964 protein-encoding gene transcripts, and 87 microRNA gene precursors. AROS design is based on ATH1 release 5.0 of the TIGR Arabidopsis genome annotation database, and Release 4.0 of the miRNA Registry at the Sanger Institute. Various additional elements are printed as controls. Microarrays can be ordered from the Galbraith laboratory. This platform represents slides ATv304.02.001-ATv304.02.300 (http://www.ag.arizona.edu/microarray ).
Web link
http://www.ag.arizona.edu/microarray Contributor(s)
Galbraith DW Submission date
Mar 06, 2006
Last update date
Mar 08, 2006
Contact name
David William Galbraith
E-mail(s)
galbraith@arizona.edu Phone
520-621-9153
URL
http://latin.arizona.edu/galbraith Organization name
University of Arizona
Department
Plant Sciences and Bio5 Institute
Lab
Galbraith
Street address
303 Forbes Building
City
Tucson
State/province
AZ
ZIP/Postal code
85721
Country
USA
Samples (27)
GSM347774 , GSM347775 , GSM347776 , GSM347777 , GSM347778 , GSM347779
GSM347780 ,
GSM347781 ,
GSM347782 ,
GSM347783 ,
GSM347784 ,
GSM347785 ,
GSM574124 ,
GSM574125 ,
GSM574126 ,
GSM574127 ,
GSM574128 ,
GSM574129 ,
GSM726758 ,
GSM726759 ,
GSM726760 ,
GSM726761 ,
GSM726762 ,
GSM726763 ,
GSM1126114 ,
GSM1126115 ,
GSM1126116 Series (4)
GSE13822 Growth temperature response in Arabidopsis
GSE23407 Control of shoot branching by Light quality in Arabidopsis plants (wt and brc1-2)
GSE29386 Transcriptional and translational effect of the lack of translation initiation factor eIF(iso)4E
GSE46196 ABP1-regulated gene expression in etiolated Arabidopsis seedlings
Data table header descriptions ID ORF Chromosomal based gene locus names
Oligo_ID Assigned by OPERON, or by STRATAGENE or the Galbraith Lab (control elements)
Description Description of the gene locus
SPOT_ID
Data table ID ORF Oligo_ID Description SPOT_ID 1_01_01
At5g49910 A005203_01
heat shock protein 70 / HSP70 (HSC70-7) identical to heat shock protein 70 [Arabidopsis thaliana] GI:6746592
1_01_02
At3g18780 A021047_01
actin 2 (ACT2) identical to SP|Q96292 Actin 2 {Arabidopsis thaliana}; nearly identical to SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and to At1g49240
1_01_03
Alien5
Control: Stratagene Spotreport Alien Oligo
-- Alien5
1_01_04
At1g64740 A001043_01
tubulin alpha-1 chain (TUA1) nearly identical to SP|P11139 Tubulin alpha-1 chain {Arabidopsis thaliana}
1_01_05
atc07
Randomly generated negative control
-- CONTROL
1_01_06
Alien1
Control: Stratagene Spotreport Alien Oligo
-- Alien1
1_01_07
At3g18780 A021047_01
actin 2 (ACT2) identical to SP|Q96292 Actin 2 {Arabidopsis thaliana}; nearly identical to SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and to At1g49240
1_01_08
atc03
Randomly generated negative control
-- CONTROL
1_01_09
At1g01950 A001280_01
armadillo/beta-catenin repeat family protein / kinesin motor family protein similar to kinesin-like protein GB:CAB41097 GI:5541717 from [Arabidopsis thaliana]; contains Pfam profiles PF00225: Kinesin motor domain, PF00514: Armadillo/beta-catenin-like repeat
1_01_10
At1g02010 At30000106
cytokinesis-related Sec1 protein, putative similar to cytokinesis-related Sec1 protein KEULE [Arabidopsis thaliana] gi|12659318|gb|AAK01291; contains Pfam domain, PF00995: Sec1 family; non-consensus GC donor splice site at exon boundary 46833
1_01_11
At1g02100 A200207_01
leucine carboxyl methyltransferase family protein contains Pfam PF04072: Leucine carboxyl methyltransferase domain; similar to Leucine carboxyl methyltransferase (Protein-leucine O- methyltransferase) (CGI-68) (SP:Q9UIC8) {Homo sapiens}
1_01_12
At1g02150 A005521_01
pentatricopeptide (PPR) repeat-containing protein low similiarity to DNA-binding protein [Triticum aestivum] GI:6958202; contains Pfam profile: PF01535 PPR repeat
1_01_13
At1g02305 A025916_01
cathepsin B-like cysteine protease, putative similar to cathepsin B-like cysteine proteinase [Nicotiana rustica] GI:609175; contains Pfam profile PF00112: Papain family cysteine protease
1_01_14
At1g02360 A001000_01
chitinase, putative similar to chitinase precursor GI:5880845 from [Petroselinum crispum]
1_01_15
At1g02530 At30000172
multidrug resistance P-glycoprotein, putative similar to multidrug-resistant protein CjMDR1 GI:14715462 from [Coptis japonica]
1_01_16
At1g02590 A200222_01
aldehyde oxidase, putative similar to aldehyde oxidase GB:BAA28630 GI:3172044 from [Arabidopsis thaliana]
1_01_17
At1g05200 A200249_01
glutamate receptor family protein (GLR3.4) plant glutamate receptor family, PMID:11379626
1_01_18
At1g05250 At30000486
peroxidase, putative similar to peroxidase; peroxidase ATP11a [Arabidopsis thaliana] gi|1546688|emb|CAA67334
1_01_19
At1g05420 A004552_01
ovate protein-related contains TIGRFAM TIGR01568 : uncharacterized plant-specific domain TIGR01568
1_01_20
At1g05460 At30000510
RNA helicase SDE3 (SDE3) identical to RNA helicase SDE3 [Arabidopsis thaliana] GI:13811296
31200 4464 Kbytes .Supplementary data files not provided
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