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Status
Public on Mar 31, 2006
Title
CDMC_Drosophila_Oligo14kv1/Oligo14kv2
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Drosophila melanogaster Manufacturer
Canadian Drosophila Microarray Centre
Manufacture protocol
The CDMC_Drosophila_Oligo14kv1 and Oligo14kv2 arrays are printed on CMT-UltraGAPS slides (Corning Inc, Acton, MA) with an aminosilane coating using a SpotArray 72 microarrayer (Perkin Elmer, Boston, MA). There are 32448 spots on each array in a 12 row by 4 column arrangement of blocks (sub-grids). Each block contains 672 spots arrayed in a 26 row by 26 column grid. Spots designated as 'EMPTY' contain only NaPO4 spotting buffer for the 14kv1 arrays or 3x SSC for the 14kv2 arrays and occupy positions 23 through 26 of the 26th row. The blocks are spaced at 4500 micron intervals and the spot-to-spot distance is 166 microns. The nominal spot diameter is 125 microns. Further information including information regarding printing conditions and post-print treatments can be found at http://www.flyarrays.com/index.php?option=com_content&task=view&id=15&Itemid=38
Support
glass
Coating
aminosilane
Description
The CDMC_Drosophila_Oligo14k1 and The CDMC_Drosophila_Oligo14k2 platforms are oligonucleotide-based glass microarrays. Transcript-specific probes were designed by the International Drosophila Array Consortium (INDAC, www.indac.net) based on release 4.1 of the D. melanogaster genome and synthesized by Illumina (www.Illumina.com). This array is produced by the Canadian Drosophila Microarray Centre located at the University of Toronto. It is available for distribution to academic labs.
Web link
http://www.flyarrays.com Contributor(s)
Westwood JT , Lam M , Kasimer D , Mo K , Razak Z , Neal SJ Submission date
Mar 28, 2006
Last update date
Dec 06, 2013
Contact name
Zak Razak
E-mail(s)
z.razak@utoronto.ca Phone
905-569-4664
URL
http://www.flyarrays.com Organization name
University of Toronto
Department
Zoology Department
Lab
Canadian Drosophila Microarray Centre
Street address
3359 Mississauga Road
City
Mississauga
State/province
ON
ZIP/Postal code
L5L 1C6
Country
Canada
Samples (216)
GSM272903 , GSM272904 , GSM272905 , GSM272906 , GSM278130 , GSM278131
GSM278133 ,
GSM278134 ,
GSM278135 ,
GSM278136 ,
GSM278137 ,
GSM278138 ,
GSM281529 ,
GSM281535 ,
GSM281536 ,
GSM281537 ,
GSM281538 ,
GSM281539 ,
GSM281540 ,
GSM281541 ,
GSM335334 ,
GSM335340 ,
GSM335341 ,
GSM335342 ,
GSM335343 ,
GSM335344 ,
GSM353432 ,
GSM353975 ,
GSM353976 ,
GSM353977 ,
GSM353978 ,
GSM353983 ,
GSM353984 ,
GSM353991 ,
GSM353992 ,
GSM353994 ,
GSM353995 ,
GSM354000 ,
GSM355075 ,
GSM355076 ,
GSM355077 ,
GSM355078 ,
GSM355079 ,
GSM355080 ,
GSM356821 ,
GSM356822 ,
GSM378192 ,
GSM378193 ,
GSM378194 ,
GSM378195 ,
GSM378196 ,
GSM378197 ,
GSM378198 ,
GSM378199 ,
GSM442770 ,
GSM442841 ,
GSM442878 ,
GSM442879 ,
GSM442880 ,
GSM442881 ,
GSM442882 ,
GSM442883 ,
GSM499041 ,
GSM499042 ,
GSM499043 ,
GSM499044 ,
GSM499045 ,
GSM499046 ,
GSM499047 ,
GSM499048 ,
GSM499049 ,
GSM499050 ,
GSM499051 ,
GSM499052 ,
GSM499053 ,
GSM499054 ,
GSM499055 ,
GSM499056 ,
GSM499057 ,
GSM499058 ,
GSM499059 ,
GSM499060 ,
GSM499061 ,
GSM499062 ,
GSM499063 ,
GSM499064 ,
GSM499065 ,
GSM499066 ,
GSM499067 ,
GSM499068 ,
GSM499069 ,
GSM499070 ,
GSM499071 ,
GSM499072 ,
GSM499073 ,
GSM499074 ,
GSM499075 ,
GSM499076 ,
GSM499077 ,
GSM499078 ,
GSM499079 ,
GSM499080 ,
GSM499081 ,
GSM499082 ,
GSM499083 ,
GSM499084 ,
GSM499085 ,
GSM499086 ,
GSM499087 ,
GSM499088 ,
GSM515047 ,
GSM515048 ,
GSM515049 ,
GSM515050 ,
GSM515051 ,
GSM515052 ,
GSM515053 ,
GSM515054 ,
GSM515055 ,
GSM515056 ,
GSM515057 ,
GSM515058 ,
GSM515059 ,
GSM515060 ,
GSM515061 ,
GSM515062 ,
GSM515063 ,
GSM515064 ,
GSM515065 ,
GSM515066 ,
GSM515067 ,
GSM515068 ,
GSM515069 ,
GSM515070 ,
GSM515071 ,
GSM515072 ,
GSM515073 ,
GSM515074 ,
GSM515075 ,
GSM515076 ,
GSM515077 ,
GSM515078 ,
GSM515079 ,
GSM515080 ,
GSM515081 ,
GSM515082 ,
GSM523614 ,
GSM523615 ,
GSM523616 ,
GSM523617 ,
GSM580470 ,
GSM580471 ,
GSM580472 ,
GSM580473 ,
GSM580474 ,
GSM580475 ,
GSM580476 ,
GSM580477 ,
GSM580478 ,
GSM580479 ,
GSM580480 ,
GSM580481 ,
GSM580482 ,
GSM580483 ,
GSM580484 ,
GSM580485 ,
GSM580486 ,
GSM580487 ,
GSM580488 ,
GSM580489 ,
GSM580490 ,
GSM580491 ,
GSM580492 ,
GSM580493 ,
GSM580494 ,
GSM580495 ,
GSM580496 ,
GSM580497 ,
GSM580498 ,
GSM580499 ,
GSM580500 ,
GSM580501 ,
GSM580502 ,
GSM580503 ,
GSM580504 ,
GSM580505 ,
GSM580506 ,
GSM580507 ,
GSM580508 ,
GSM580509 ,
GSM580510 ,
GSM580511 ,
GSM580512 ,
GSM580513 ,
GSM580514 ,
GSM580515 ,
GSM580516 ,
GSM580517 ,
GSM580518 ,
GSM580519 ,
GSM580520 ,
GSM580521 ,
GSM580522 ,
GSM580523 ,
GSM580524 ,
GSM580525 ,
GSM1001063 ,
GSM1001066 ,
GSM1001067 ,
GSM1279680 ,
GSM1279681 ,
GSM1279682 ,
GSM2044515 ,
GSM2044516 ,
GSM2044517 ,
GSM2044518 Series (14)
GSE10808 Chronic potassium chloride (KCl) treatment induced gene expression changes in Drosophila head
GSE10988 Gene expression changes in Drosophila head secondary to levetiracetam treatment during Pentylenetetrazole withdrawal.
GSE11442 Ectopic activation of the immune response in the larval airway epithelium
GSE11444 Infection of the larval airway epithelium by Erwinia carotovora
GSE11479 Larval airway epithelium response to infection
GSE13288 miR-309-dependent unstable maternal mRNAs are stabilized in smaug mutants
GSE15136 A systematic search for transgenerational effect of drug exposure to adult males using a novel Drosophila model
GSE17748 Ecdysone signaling and transcript signature in Drosophila cells resistant against methoxyfenozide
GSE19973 Condition-dependence of the sexually dimorphic transcriptome in Drosophila melanogaster
GSE20497 Menin links the stress response to genome stability in Drosophila melanogaster
GSE20938 Chronic activation of the epithelial immune system of the fruit fly's salivary glands has a negative effect on organismal growth and induces a peculiar set of target genes
GSE23662 Population transcriptomics of Drosophila melanogaster females
GSE40768 Changes in gene expression in fruitfly ovaries in mutants affecting components of rasiRNA system
GSE77116 Expression analysis of circadian light response in Drosophila recombinant inbred lines (RIL)
Data table header descriptions ID CDMC_Number CDMC internal number to track individual probes or amplifications.
Block Block, or sub-array, on the printed surface in which the feature appears.
Column The column within the given block where the feature appears.
Row The row within the given block where the feature appears.
plate_coordinate Alpha-numeric coordinate of the oligo in the printing source plate.
ORF The computed gene number (CG number) curated by FlyBase.
GB_ACC GenBank accession number
SPOT_ID spot identifier
SampleID Unique oligonucleotide identity.
SEQUENCE Oligonucleotide probe sequence.
oligo_length Oligonucleotide probe length.
FBgn FlyBase gene identifier.
Fban FlyBase annotation number.
Chromosome_arm Chromosome arm.
Chromosome Chromosome.
Gene_Symbol Gene symbol for the D. melanogaster target gene.
Unigene Unigene cluster identifier for the D. melanogaster target gene.
GENE Entrez GENE ID
Cytoband Polytene chromosome division.
Duplicate Spots are printed in duplicate (a,b).
SPOT_ID
Data table ID CDMC_Number Block Column Row plate_coordinate ORF GB_ACC SPOT_ID SampleID SEQUENCE oligo_length FBgn Fban Chromosome_arm Chromosome Gene_Symbol Unigene GENE Cytoband Duplicate SPOT_ID 1
CDMC20001
1
1
1
DAC01-A12
Z49777 CONTROL_Arabidopsis
1-Z49777_1
ACCGGTTGCTTTGGTGGTTACTACTTGCCAACATTGGTTCAGTTCGAGCCTGGTCTCACTTCTCCTCCT
69
a
2
CDMC20001
1
2
1
DAC01-A12
Z49777 CONTROL_Arabidopsis
1-Z49777_1
ACCGGTTGCTTTGGTGGTTACTACTTGCCAACATTGGTTCAGTTCGAGCCTGGTCTCACTTCTCCTCCT
69
b
3
CDMC20002
1
3
1
DAC01-A24
Q9LU32
7-Q9LU32_1
GCCGTAGAAATGACGCGATGATGGGAATTGAGAAAGGGAAGTGGAGTGTTAGTCCCACGTGTTGGAGGA
69
a
4
CDMC20002
1
4
1
DAC01-A24
Q9LU32
7-Q9LU32_1
GCCGTAGAAATGACGCGATGATGGGAATTGAGAAAGGGAAGTGGAGTGTTAGTCCCACGTGTTGGAGGA
69
b
5
CDMC20003
1
5
1
DAC01-E12
X64464 CONTROL_Arabidopsis
11-X64464_1
TGCCCCGGATTCATTGCATCTGACATGACTGCAGAGCTTGGAGAAGACATGGAAAAGAAAATCCTGGGA
69
a
6
CDMC20003
1
6
1
DAC01-E12
X64464 CONTROL_Arabidopsis
11-X64464_1
TGCCCCGGATTCATTGCATCTGACATGACTGCAGAGCTTGGAGAAGACATGGAAAAGAAAATCCTGGGA
69
b
7
CDMC20004
1
7
1
DAC01-E24
O04513
18-O04513_1
CCGCAGGCAATGGAAACTCACAGAACTCGCATGTTACAATCCTCTTGGGGCAAATTTCTCCTTTATGAC
69
a
8
CDMC20004
1
8
1
DAC01-E24
O04513
18-O04513_1
CCGCAGGCAATGGAAACTCACAGAACTCGCATGTTACAATCCTCTTGGGGCAAATTTCTCCTTTATGAC
69
b
9
CDMC20005
1
9
1
DAC01-I12
O49366
20-O49366_1
AAAGAGGCCCCATGCTCTGTCTGGTGTCAGCGCTACATGGTCCAGGACAAGTATGGACTTCCCCACCCC
69
a
10
CDMC20005
1
10
1
DAC01-I12
O49366
20-O49366_1
AAAGAGGCCCCATGCTCTGTCTGGTGTCAGCGCTACATGGTCCAGGACAAGTATGGACTTCCCCACCCC
69
b
11
CDMC20006
1
11
1
DAC01-I24
U74610 CONTROL_Arabidopsis
13-U74610_1
TCCAGCTCACGACTACAAAGGTTTCGAGGTAAGTACAGTTGGAGAAGAGATGCAACACAACCCGCGTCT
69
a
12
CDMC20006
1
12
1
DAC01-I24
U74610 CONTROL_Arabidopsis
13-U74610_1
TCCAGCTCACGACTACAAAGGTTTCGAGGTAAGTACAGTTGGAGAAGAGATGCAACACAACCCGCGTCT
69
b
13
CDMC20007
1
13
1
DAC01-M12
O81842
11-O81842_1
CGCTGTCTCTGTCTATGCTCAATCAAGCAAGCTCTCAACCCCAACTTGGTTTGGAGCATAGAAGGAGCC
69
a
14
CDMC20007
1
14
1
DAC01-M12
O81842
11-O81842_1
CGCTGTCTCTGTCTATGCTCAATCAAGCAAGCTCTCAACCCCAACTTGGTTTGGAGCATAGAAGGAGCC
69
b
15
CDMC20008
1
15
1
DAC01-M24
CONTROL_Arabidopsis
14-ATU18126_1
CTTGGGGTAATCGGATTGGTATCATTGGATTGGTTTACGCAGGGATCGAGAGTGGTATTGTGGCTGCCA
69
a
ATU18126
16
CDMC20008
1
16
1
DAC01-M24
CONTROL_Arabidopsis
14-ATU18126_1
CTTGGGGTAATCGGATTGGTATCATTGGATTGGTTTACGCAGGGATCGAGAGTGGTATTGTGGCTGCCA
69
b
ATU18126
17
CDMC20009
1
17
1
DAC02-A12
Q9LJQ4
22-Q9LJQ4_1
GCGGGAAGCTAGTGAGTTTCTGAGAGAGTTACCGGAGATGAAACTCGGTAATGTTCTTCAGGAGATCGG
69
a
18
CDMC20009
1
18
1
DAC02-A12
Q9LJQ4
22-Q9LJQ4_1
GCGGGAAGCTAGTGAGTTTCTGAGAGAGTTACCGGAGATGAAACTCGGTAATGTTCTTCAGGAGATCGG
69
b
19
CDMC20010
1
19
1
DAC02-A24
O04600
15-O04600_1
GCATTGACCAGTACTCTAAGAGACGGACCAGATCAAGAACCTTGTCCTCTTTGGGAACAGACAACCGCA
69
a
20
CDMC20010
1
20
1
DAC02-A24
O04600
15-O04600_1
GCATTGACCAGTACTCTAAGAGACGGACCAGATCAAGAACCTTGTCCTCTTTGGGAACAGACAACCGCA
69
b
32448 5627 Kbytes .Supplementary data files not provided
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