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Status
Public on Apr 08, 2006
Title
The miniarray (Arabidopsis Pathoarray) 464_001
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Arabidopsis thaliana Manufacturer
Stanford Functional Genomics Facility
Manufacture protocol
The arrays were printed in the Stanford Functional Genomics Facility with custom built microarrayers. Oligonucleotides were printed with a 200μm pitch onto Corning UltraGAPS slides at a concentration of 50 μM in Pront! Universal Spotting Solution. 4 x 4 arrays were printed onto each slide utilizing Majer Precission (http://www.majerprecision.com/ ) MicroQuill 2000 pins. The oligonucleotide probe set was printed twice for each subarray and duplicates for each feature was spotted for a total of four subarrays per array.
Support
glass
Coating
aminosilane
Description
This set includes 576 oligonucleotides, 50 to 70-mers, consisting of 464 Arabidopsis pathogen-responsive and 107 Arabidopsis normalization genes and 5 arbitrary spiked-controls. Each feature contains 0.9mg/ml of oligonucleotide above and 0.25mg/ml of calibration oligonucleotide.
Contributor(s)
Sato M , Katagiri F Submission date
Apr 06, 2006
Last update date
May 27, 2007
Contact name
Masanao Sato
Phone
+81-564-59-5876
Organization name
National Institute for Basic Biology
Lab
Developmental Genetics
Street address
5-1 Higashiyama, Myodaiji
City
Okazaki
State/province
Aichi
ZIP/Postal code
444-8787
Country
Japan
Samples (403)
GSM103772 , GSM103773 , GSM103774 , GSM103775 , GSM124754 , GSM124755
GSM124756 ,
GSM124757 ,
GSM124758 ,
GSM124759 ,
GSM124760 ,
GSM124761 ,
GSM203802 ,
GSM203803 ,
GSM203804 ,
GSM203805 ,
GSM203806 ,
GSM203807 ,
GSM203808 ,
GSM203809 ,
GSM203810 ,
GSM203811 ,
GSM203812 ,
GSM203813 ,
GSM203814 ,
GSM203815 ,
GSM203816 ,
GSM203817 ,
GSM203818 ,
GSM203819 ,
GSM203820 ,
GSM203821 ,
GSM203822 ,
GSM203823 ,
GSM203824 ,
GSM203825 ,
GSM205842 ,
GSM205843 ,
GSM205844 ,
GSM205845 ,
GSM205846 ,
GSM205847 ,
GSM205848 ,
GSM205849 ,
GSM205850 ,
GSM205851 ,
GSM205852 ,
GSM205853 ,
GSM205854 ,
GSM205855 ,
GSM205856 ,
GSM205857 ,
GSM205858 ,
GSM205859 ,
GSM205860 ,
GSM205861 ,
GSM205862 ,
GSM205863 ,
GSM205864 ,
GSM205865 ,
GSM205866 ,
GSM205867 ,
GSM205868 ,
GSM205869 ,
GSM205870 ,
GSM205871 ,
GSM205872 ,
GSM205873 ,
GSM205874 ,
GSM205875 ,
GSM205876 ,
GSM205877 ,
GSM205878 ,
GSM205879 ,
GSM205880 ,
GSM205881 ,
GSM205882 ,
GSM205883 ,
GSM205884 ,
GSM205885 ,
GSM205886 ,
GSM205887 ,
GSM205888 ,
GSM205889 ,
GSM205890 ,
GSM205891 ,
GSM205892 ,
GSM205893 ,
GSM205894 ,
GSM205895 ,
GSM278371 ,
GSM278372 ,
GSM278373 ,
GSM278374 ,
GSM278375 ,
GSM278376 ,
GSM278377 ,
GSM278379 ,
GSM278380 ,
GSM278381 ,
GSM278382 ,
GSM278383 ,
GSM278384 ,
GSM278385 ,
GSM278387 ,
GSM278388 ,
GSM278389 ,
GSM278390 ,
GSM278391 ,
GSM278392 ,
GSM278393 ,
GSM278395 ,
GSM278396 ,
GSM278397 ,
GSM278398 ,
GSM278399 ,
GSM278400 ,
GSM278401 ,
GSM278402 ,
GSM278403 ,
GSM278404 ,
GSM278405 ,
GSM278406 ,
GSM278407 ,
GSM278408 ,
GSM278409 ,
GSM278410 ,
GSM278411 ,
GSM278412 ,
GSM278413 ,
GSM278414 ,
GSM278415 ,
GSM278416 ,
GSM278417 ,
GSM278418 ,
GSM278419 ,
GSM278420 ,
GSM278421 ,
GSM278422 ,
GSM278423 ,
GSM278424 ,
GSM278425 ,
GSM278426 ,
GSM278427 ,
GSM278428 ,
GSM278429 ,
GSM278430 ,
GSM278431 ,
GSM278432 ,
GSM278433 ,
GSM278434 ,
GSM278435 ,
GSM278436 ,
GSM278437 ,
GSM278438 ,
GSM278439 ,
GSM278440 ,
GSM278441 ,
GSM278442 ,
GSM278443 ,
GSM278444 ,
GSM278445 ,
GSM278446 ,
GSM278447 ,
GSM278448 ,
GSM278449 ,
GSM278450 ,
GSM278451 ,
GSM278452 ,
GSM278453 ,
GSM278454 ,
GSM278455 ,
GSM278456 ,
GSM278457 ,
GSM278458 ,
GSM278459 ,
GSM278460 ,
GSM278461 ,
GSM278462 ,
GSM278463 ,
GSM278464 ,
GSM278465 ,
GSM356658 ,
GSM356659 ,
GSM356660 ,
GSM356661 ,
GSM356662 ,
GSM356663 ,
GSM356664 ,
GSM356665 ,
GSM356666 ,
GSM356667 ,
GSM356668 ,
GSM356669 ,
GSM356670 ,
GSM356671 ,
GSM356672 ,
GSM356673 ,
GSM356674 ,
GSM356675 ,
GSM356676 ,
GSM356677 ,
GSM356678 ,
GSM356679 ,
GSM356680 ,
GSM356681 ,
GSM356682 ,
GSM356683 ,
GSM356684 ,
GSM356685 ,
GSM356686 ,
GSM356687 ,
GSM356688 ,
GSM356689 ,
GSM356690 ,
GSM356691 ,
GSM356692 ,
GSM356693 ,
GSM356694 ,
GSM356695 ,
GSM356696 ,
GSM356697 ,
GSM356698 ,
GSM356699 ,
GSM356700 ,
GSM356701 ,
GSM356702 ,
GSM356703 ,
GSM356704 ,
GSM356705 ,
GSM356706 ,
GSM356707 ,
GSM356708 ,
GSM356709 ,
GSM356710 ,
GSM356711 ,
GSM356712 ,
GSM356713 ,
GSM356714 ,
GSM356715 ,
GSM356716 ,
GSM356717 ,
GSM356718 ,
GSM356719 ,
GSM356720 ,
GSM356721 ,
GSM467607 ,
GSM467608 ,
GSM467609 ,
GSM467610 ,
GSM467611 ,
GSM467612 ,
GSM467613 ,
GSM467614 ,
GSM467615 ,
GSM467616 ,
GSM467617 ,
GSM467618 ,
GSM467619 ,
GSM467620 ,
GSM467621 ,
GSM467622 ,
GSM467623 ,
GSM467624 ,
GSM467625 ,
GSM467626 ,
GSM467627 ,
GSM467628 ,
GSM467629 ,
GSM467630 ,
GSM467631 ,
GSM467632 ,
GSM467633 ,
GSM490873 ,
GSM490874 ,
GSM490875 ,
GSM490876 ,
GSM490877 ,
GSM490878 ,
GSM490879 ,
GSM490880 ,
GSM490881 ,
GSM490882 ,
GSM490883 ,
GSM490884 ,
GSM490885 ,
GSM490886 ,
GSM490887 ,
GSM490888 ,
GSM490889 ,
GSM490890 ,
GSM490891 ,
GSM490892 ,
GSM490893 ,
GSM490894 ,
GSM490895 ,
GSM490896 ,
GSM490897 ,
GSM490898 ,
GSM490899 ,
GSM490900 ,
GSM490901 ,
GSM490902 ,
GSM490903 ,
GSM490904 ,
GSM490905 ,
GSM490906 ,
GSM490907 ,
GSM490908 ,
GSM490909 ,
GSM490910 ,
GSM490911 ,
GSM490912 ,
GSM490913 ,
GSM490914 ,
GSM490915 ,
GSM490916 ,
GSM490917 ,
GSM490918 ,
GSM490919 ,
GSM490920 ,
GSM490921 ,
GSM490922 ,
GSM490923 ,
GSM490924 ,
GSM490925 ,
GSM490926 ,
GSM490927 ,
GSM490928 ,
GSM490929 ,
GSM490930 ,
GSM490931 ,
GSM490932 ,
GSM490933 ,
GSM490934 ,
GSM490935 ,
GSM490936 ,
GSM490937 ,
GSM490938 ,
GSM490939 ,
GSM490940 ,
GSM490941 ,
GSM490942 ,
GSM490943 ,
GSM490944 ,
GSM490945 ,
GSM490946 ,
GSM490947 ,
GSM490948 ,
GSM490949 ,
GSM490950 ,
GSM490951 ,
GSM490952 ,
GSM490953 ,
GSM490954 ,
GSM490955 ,
GSM490956 ,
GSM490957 ,
GSM490958 ,
GSM490959 ,
GSM490960 ,
GSM490961 ,
GSM490962 ,
GSM490963 ,
GSM490964 ,
GSM490965 ,
GSM490966 ,
GSM490967 ,
GSM490968 ,
GSM490969 ,
GSM490970 ,
GSM490971 ,
GSM490972 ,
GSM490973 ,
GSM490974 ,
GSM490975 ,
GSM490976 ,
GSM490977 ,
GSM490978 ,
GSM832113 ,
GSM832114 ,
GSM832115 ,
GSM832116 ,
GSM832117 ,
GSM832118 ,
GSM832119 ,
GSM832120 ,
GSM832121 ,
GSM832122 ,
GSM832123 ,
GSM832124 ,
GSM832125 ,
GSM832126 ,
GSM832127 ,
GSM832128 ,
GSM832129 ,
GSM832130 ,
GSM832131 ,
GSM832132 ,
GSM832133 ,
GSM832134 ,
GSM832135 ,
GSM832136 Series (9)
GSE4632 Evaluation of performance of Arabidopsis Pathoarray 464_001: comparison with ATH1
GSE5308 Evaluation of the performance of the Arabidopsis Pathoarray 464_001: an example of detailed analysis of mutants
GSE8273 Interplay between MAMPs-triggered and SA-mediated defense responses
GSE8298 Natural variation in RPS2-mediated resistance: correlating gene-expression profiles to phenotypic responses.
GSE11009 The Genetic Network Controlling the Arabidopsis Transcriptional Response to Pseudomonas syringae pv. maculicola
GSE14237 Arabidopsis CBP60g Contributes to MAMP-Induced SA Accumulation and Is Involved in Disease Resistance
GSE18865 CBP60g and CBP60h play partially redundant and critical roles in salicylic acid signaling
GSE19663 Modeling regulatory relationships in Arabidopsis immune signaling network.
GSE33648 Expression analysis of Arabidopsis mpk11 mutant treated with flg22
Data table header descriptions ID serial number for each probe on this micorarray
GENE_MODEL Chromosome based name of the open reading frame given by the Arabidopsis Genome Initiative (AGI) annotators
ORF Locus tag
SEQUENCE Sequence of oligonucleotide probe
SPOT_ID spot identifier
Data table ID GENE_MODEL ORF SEQUENCE SPOT_ID 1
At1g02140.1
At1g02140 TGCCAGAGCAGTAATGATCCTGAAGGACTTCGCATCTTCTACTATCTTGTTCAGGACTTGAAATGTCT
ARABIDOPSIS_gene
2
At1g02450.1
At1g02450 AGTTAGCTGAAAATTCTGGCGTCGTGAGGAGGAAATCTAACGGCGGAGAAAGGTCCGG
ARABIDOPSIS_gene
3
At1g03220.1
At1g03220 GGGCAGGGTCGTTAAAATCCCAAATTTGATCTTCGATTGTGGAGCAACGT
ARABIDOPSIS_gene
4
At1g03850.1
At1g03850 ATCTGATGGCTGCTCATATTAATGGCCACTCCATCAAGATTCGAACCGATACATGGTCGTCGTT
ARABIDOPSIS_gene
5
At1g03870.1
At1g03870 TGAGATGTTCGGAGAGCACAAGCTTTCGCCGATTGCTCCTGCCCCTAAAT
ARABIDOPSIS_gene
6
At1g04410.1
At1g04410 CCTTCCCTGTAACTTGTCGCAATGGAGACTGGAGTATTGTCCAAGGCCTTCC
ARABIDOPSIS_gene
7
At1g05010.1
At1g05010 TCGATGTTCCTCCGGTTAAGCATTCAATCGTCGTTAATCTCGGCGATCAAC
ARABIDOPSIS_gene
8
At1g05340.1
At1g05340 TTCGGTAGCTCAGGGTAAAGTGGAAACCAAGTCTAAGGGTGACGGATTCTTCAAAGGCT
ARABIDOPSIS_gene
9
At1g05570.1
At1g05570 TATGGTCATCAGTTAGGACGCTAGCTCGAGGCTACGAGATCGTGATGGGC
ARABIDOPSIS_gene
10
At1g05680.1
At1g05680 AGGACTTATTGTAAGCTGGAGTCCTCAGCTTGACGTACTTGCACATAAAT
ARABIDOPSIS_gene
11
At1g08050.1
At1g08050 CAGAGAGCAACTGCTCGTGGAGATTCGACCCAGGGTTTTAGCCCGGTGCA
ARABIDOPSIS_gene
12
At1g08510.1
At1g08510 AGAGACAGTGTGCTTCAGTCCCTCACTGCAGTTACGGGTTGCGATATCGGTAACCTGGCA
ARABIDOPSIS_gene
13
At1g08720.1
At1g08720 ACGGAAGTGCTGAAGCCTTTGAACCGGCTTGTACTTCCTACACCACAATAGATGTCATCT
ARABIDOPSIS_gene
14
At1g08830.1
At1g08830 AGATTGATGTAATAAGGAGGTCCAACCTTAGACCTGGGTTTGGTAGTTGTGT
ARABIDOPSIS_gene
15
At1g08930.1
At1g08930 AGGATTTCCAAGTGCTATTGGCACATCCGTAATAGCCACAATTATGGTTCCA
ARABIDOPSIS_gene
16
At1g09070.1
At1g09070 AGCATGGTAAGGCTGGAGCTGGAATGGGACTAGGACTTGGGCTTGGAGCT
ARABIDOPSIS_gene
17
At1g09130.1
At1g09130 AGCATACTGGGAATTCCGTGGAGACTGTAGCTAACGTAATGAGAAGGCCATATTACATGGAT
ARABIDOPSIS_gene
18
At1g09200.1
At1g09200 AGCTTACCTCGTCGGACTCTTCGAAGACACCAATCTCTGCGCCATTCACGCC
ARABIDOPSIS_gene
19
At1g09350.1
At1g09350 AGACAACTTTGTGAGGGCTGACGAGCGAGGTTCTTGTCAACACCAGTTTGC
ARABIDOPSIS_gene
20
At1g09500.2
At1g09500 AATGAAGACATTACTGAGCTGAATTCAGTGACTTTCAATGTGTGTCTGGATAAAGTGAAAAGT
ARABIDOPSIS_gene
576 56 Kbytes .Supplementary file Size Download File type/resource GPL3638_completeLayout.txt.gz
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