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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 01, 2006 |
| Title |
L vannamei microarray 2005 |
| Technology type |
spotted DNA/cDNA |
| Distribution |
non-commercial |
| Organism |
Penaeus vannamei |
| Manufacturer |
Hollings Marine Laboratory, Genomics Core |
| Manufacture protocol |
contact spotting of L. vannamei cDNA clones using a Q-ArrayMax (Genetix) machine, baked for 2 h at 80 ºC, and stored under vacuum until used
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| Support |
glass |
| Coating |
amino silane |
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| Web link |
http://www.marinegenomics.org
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| Contributor(s) |
Robalino J, Gross PS, Colglazier J, Peck MT, Chapman RW, Warr G |
| Submission date |
May 26, 2006 |
| Last update date |
Jun 01, 2006 |
| Contact name |
MarineGenomics Project |
| E-mail(s) |
info@marinegenomics.org
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| Phone |
843-762-8869
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| Fax |
843-762-8847
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| URL |
http://www.marinegenomics.org
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| Organization name |
MarineGenomics.org
|
| Lab |
HML
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| Street address |
331 Fort Johnson Rd
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| City |
Charleston |
| State/province |
SC |
| ZIP/Postal code |
29412 |
| Country |
USA |
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| Samples (33)
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GSM111425, GSM111426, GSM111427, GSM111428, GSM111429, GSM111430
GSM111431, GSM111432, GSM111433, GSM111434, GSM111435, GSM111436, GSM111437, GSM111438, GSM111439, GSM111440, GSM111441, GSM111442, GSM111443, GSM111444, GSM111445, GSM111446, GSM111447, GSM111448, GSM111449, GSM111450, GSM111451, GSM111452, GSM111453, GSM111454, GSM111455, GSM111456, GSM111457
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| Series (3) |
| GSE4949 |
Tissue-specific expression profiles in L. vannamei |
| GSE4954 |
Evaluation of technical (array-to-array) reproducibility of L. vannamei microarray |
| GSE4955 |
Profiling of WSSV infection in hepatopancreas of shrimp |
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| Data table header descriptions |
| ID |
Incremental generic ID Number |
| Array Row |
Microarray row index |
| Array Column |
Microarray column index |
| Row |
Microarray sub-block row index |
| Column |
Microarray sub-block column index |
| X Location |
x coordinate |
| Y Location |
y coordinate |
| Name |
Gene name |
| GB_ACC |
GenBank Accession number |
| SEQUENCE |
Genetic sequence of the spot |
| SPOT_ID |
Spot identification label |
| Data table |
| ID |
Array Row |
Array Column |
Row |
Column |
X Location |
Y Location |
Name |
GB_ACC |
SEQUENCE |
SPOT_ID |
| 1 |
1 |
1 |
1 |
1 |
2480 |
3760 |
landing |
|
|
-- landing |
| 2 |
1 |
1 |
1 |
2 |
2720 |
3760 |
landing |
|
|
-- landing |
| 3 |
1 |
1 |
1 |
3 |
2940 |
3740 |
landing |
|
|
-- landing |
| 4 |
1 |
1 |
1 |
4 |
3210 |
3760 |
4789 |
BF023818 |
GGGGATGCACTCAAAGCTTTACATGACCAATCAGACATATCAGAAGTTGGCAGTTACTTCCTGAAGACTAACTTATGTCAGTAAAAATTTCAGTAAACCACTTGTACCATTATATAGGCCCTTCTCAGGTGCTTTAAAAAGAAATGCTAGAGCATTAAGATCATGATCCTTCTGATCTTTACATAGTGAAACCTTTGCACCTTGTATTAGAATATTAAAACTACAAACCATGATTTGTTCTTCCAAATATACATTTATAAATAATTGTACCTGAGACAAATTTTAGTGACAACTTATAGCTTTTTGTAAAGGTTGTTTGTAAAACAAACAGAAAATTATATTTGAGGGTTTAATTTTCTAGTTAAAGAGTTGAGAAAACAATGTCATATTTGAGACAAGCAAAGTTGACACTC |
|
| 5 |
1 |
1 |
1 |
5 |
3440 |
3750 |
4789 |
BF023818 |
GGGGATGCACTCAAAGCTTTACATGACCAATCAGACATATCAGAAGTTGGCAGTTACTTCCTGAAGACTAACTTATGTCAGTAAAAATTTCAGTAAACCACTTGTACCATTATATAGGCCCTTCTCAGGTGCTTTAAAAAGAAATGCTAGAGCATTAAGATCATGATCCTTCTGATCTTTACATAGTGAAACCTTTGCACCTTGTATTAGAATATTAAAACTACAAACCATGATTTGTTCTTCCAAATATACATTTATAAATAATTGTACCTGAGACAAATTTTAGTGACAACTTATAGCTTTTTGTAAAGGTTGTTTGTAAAACAAACAGAAAATTATATTTGAGGGTTTAATTTTCTAGTTAAAGAGTTGAGAAAACAATGTCATATTTGAGACAAGCAAAGTTGACACTC |
|
| 6 |
1 |
1 |
1 |
6 |
3710 |
3750 |
4816 |
BF023845 |
GGGGACATCCACTCGGGTATAATCACAGNGGAGTCCCCCGTGCTGACGCTCTCCCCCGGGGCCAGACACACACTGGAGCTTAAATTTTTTNCNCGTGGGTCGGTGGTGTACCCTGCTACTCTAAGGATTCGCAAGAAGACCCCCGAAGGCCGCTACGAGGCTCTGCCCTTCCTGAACCTCCGCAACTACGGCGACACAGACAACACCCACTGGATTAGCTTCAGCCACCAGTACCTCGTCCCTTCAGACACCGAGGAAGTGTCCTATCAGCTGGTGATCGAGGCCGACCTGGGGAGCGACTTAAACAACCTGGTGGCCTTGGACGACCTCAAGATAACGACGTCGTGAGGGGGTCGTGAGCAGGAAGGTGAAGGCGGGGTCGTCGCTCTGCACTTTCTCTCGTTNGGGATAAAATAAAGAGTCCTTATTTT |
|
| 7 |
1 |
1 |
1 |
7 |
3950 |
3760 |
4816 |
BF023845 |
GGGGACATCCACTCGGGTATAATCACAGNGGAGTCCCCCGTGCTGACGCTCTCCCCCGGGGCCAGACACACACTGGAGCTTAAATTTTTTNCNCGTGGGTCGGTGGTGTACCCTGCTACTCTAAGGATTCGCAAGAAGACCCCCGAAGGCCGCTACGAGGCTCTGCCCTTCCTGAACCTCCGCAACTACGGCGACACAGACAACACCCACTGGATTAGCTTCAGCCACCAGTACCTCGTCCCTTCAGACACCGAGGAAGTGTCCTATCAGCTGGTGATCGAGGCCGACCTGGGGAGCGACTTAAACAACCTGGTGGCCTTGGACGACCTCAAGATAACGACGTCGTGAGGGGGTCGTGAGCAGGAAGGTGAAGGCGGGGTCGTCGCTCTGCACTTTCTCTCGTTNGGGATAAAATAAAGAGTCCTTATTTT |
|
| 8 |
1 |
1 |
1 |
8 |
4200 |
3770 |
4823 |
BF023852 |
GGGGACTGCTCTCGGGTTCGCAGACATGGCAGCACAGGTCCCCAAGCTCGCTCTCAACAACGGGAGGAACATACCCATCCTGGGTCTTGGCACTTGGAAGTCGAAACCCGGCGAAGTCACCCAAGCTGTGAAAGATGCCATTGCCTGTGGATATCGCCACATTGACTGCGCCCTCGCCTACAGCAACGAAGCCGAAGTCGGGGCCGCGATCAAGGCCAAGATCGAAGACGGGACAGTCAAGCGCGAAGACCTGTTCATCACGAGCAAGTTATGGAACACCTTCCACAGTCGTCCCCTGGTCACCGCCTCCCTGAAGCAGTCGCTCGCCAACCTGGGGCTCGACTACCTGGACTTGTACCTCATCCACTGGCCGATGGGCTACCAGGAGAACGCCGCCTCTTCCCAAGGACGAGAACGGCAAGTTCATCTACACCGACGTGGACTACCTCGAGACCTGGGCGGNATGGAGGACCCGTCANCAAGGCCTNTCAAGGCATNGGNATTTCACTTCATTCCGGCAAATCAGGGATCTGGGCAACTGCGNACCAACCCGGAACACAATGGGNGCNCCTTNCTGACCAAAAGAACTGTCGATTTGCNAAGAACGGTAACAGNAACTGCTCATCCTCGGGATACAANAAAAC |
|
| 9 |
1 |
1 |
1 |
9 |
4440 |
3730 |
4823 |
BF023852 |
GGGGACTGCTCTCGGGTTCGCAGACATGGCAGCACAGGTCCCCAAGCTCGCTCTCAACAACGGGAGGAACATACCCATCCTGGGTCTTGGCACTTGGAAGTCGAAACCCGGCGAAGTCACCCAAGCTGTGAAAGATGCCATTGCCTGTGGATATCGCCACATTGACTGCGCCCTCGCCTACAGCAACGAAGCCGAAGTCGGGGCCGCGATCAAGGCCAAGATCGAAGACGGGACAGTCAAGCGCGAAGACCTGTTCATCACGAGCAAGTTATGGAACACCTTCCACAGTCGTCCCCTGGTCACCGCCTCCCTGAAGCAGTCGCTCGCCAACCTGGGGCTCGACTACCTGGACTTGTACCTCATCCACTGGCCGATGGGCTACCAGGAGAACGCCGCCTCTTCCCAAGGACGAGAACGGCAAGTTCATCTACACCGACGTGGACTACCTCGAGACCTGGGCGGNATGGAGGACCCGTCANCAAGGCCTNTCAAGGCATNGGNATTTCACTTCATTCCGGCAAATCAGGGATCTGGGCAACTGCGNACCAACCCGGAACACAATGGGNGCNCCTTNCTGACCAAAAGAACTGTCGATTTGCNAAGAACGGTAACAGNAACTGCTCATCCTCGGGATACAANAAAAC |
|
| 10 |
1 |
1 |
1 |
10 |
4710 |
3740 |
4846 |
BF023875 |
GGGCGGGTAGAATTATCGTCCGACAATAATCGCGACCATGATAAAGAAAATAGAGCAAATNTGAAGAGTCAAGGCCCGAAGCGAAAAAGTNAANTANCNCCACCGTCTAACAGCAAAAAGAAGAAACCCCGGANGGCCAGCGTAGAAGAAAAACTGAAAGCCTTGANCAACANGGATAAAAGTCCCCGCAAAACGAANGGCAAATNTCCCGTTTTGAGACGAAGAAAAGCGAGAAAGACCGCAGAGGTGGGTTTACAAGCAACACAACCTCAGCTTTCTCAAAAGAAGCCAGCGGTGGGCTCACTCAAGAGAGGAGCGAGTNCTGAGGCTGGGAATAGTGCCAAGAGGTCTAATACACAGATCGACGAAGGAATCTAAAATCAACAAAAGTGTCGTGAGGTGAACAGACTAACATGGCCGCCTCGAAGAAACAACGTCAATAAGAGGAGAGATTGGAATGAAGACTCTGCCNTTTCGCCGAGTCANGGGANGGCCCCTTTTCGCCTAAGGGG |
|
| 11 |
1 |
1 |
1 |
11 |
4950 |
3740 |
4846 |
BF023875 |
GGGCGGGTAGAATTATCGTCCGACAATAATCGCGACCATGATAAAGAAAATAGAGCAAATNTGAAGAGTCAAGGCCCGAAGCGAAAAAGTNAANTANCNCCACCGTCTAACAGCAAAAAGAAGAAACCCCGGANGGCCAGCGTAGAAGAAAAACTGAAAGCCTTGANCAACANGGATAAAAGTCCCCGCAAAACGAANGGCAAATNTCCCGTTTTGAGACGAAGAAAAGCGAGAAAGACCGCAGAGGTGGGTTTACAAGCAACACAACCTCAGCTTTCTCAAAAGAAGCCAGCGGTGGGCTCACTCAAGAGAGGAGCGAGTNCTGAGGCTGGGAATAGTGCCAAGAGGTCTAATACACAGATCGACGAAGGAATCTAAAATCAACAAAAGTGTCGTGAGGTGAACAGACTAACATGGCCGCCTCGAAGAAACAACGTCAATAAGAGGAGAGATTGGAATGAAGACTCTGCCNTTTCGCCGAGTCANGGGANGGCCCCTTTTCGCCTAAGGGG |
|
| 12 |
1 |
1 |
1 |
12 |
5230 |
3740 |
4879 |
BF023908 |
GGGGTCTCATTTTTCTTTTCTTTTTTATNGGAGTCATATTCTCTTTATTTTACTTTACCATTGTATGTGTGGTATGAAGTTTAATTTCTTTTCCAAATAGAGAAATTATAGTCTTGTTTGAGCTGTCACATTCCAGTTTGAGAGAAATTTTGTATGGAAATGAAATAAAAAGTTCAATACT |
|
| 13 |
1 |
1 |
1 |
13 |
5490 |
3730 |
4879 |
BF023908 |
GGGGTCTCATTTTTCTTTTCTTTTTTATNGGAGTCATATTCTCTTTATTTTACTTTACCATTGTATGTGTGGTATGAAGTTTAATTTCTTTTCCAAATAGAGAAATTATAGTCTTGTTTGAGCTGTCACATTCCAGTTTGAGAGAAATTTTGTATGGAAATGAAATAAAAAGTTCAATACT |
|
| 14 |
1 |
1 |
1 |
14 |
5680 |
3710 |
4921 |
BF023950 |
GGGGGAGGAACAACAACTCAGCCGAGTCGTCCTCACCATGATGGTCGACCCCGGCGGGATAGGCCTNTTTATAGCGGCCACGCTGTTGTCCATAGTGGAGGCAGTGCAGGAGCTGTCCACAGAGGAATGCTTCGCTGTCGGCCTGAACAAGGCTAACCTCCTGTGCTCTTCTTGTGATACTCTCAAGGAGTTCAACCTTGATGTGTTGGAGGCAAATTGCCGNGGGTGCTGCAATGTGGATGACGTAAATGCCACCCCAACGAAGTACCCGCGGGCCATCCTCGAGGTCTGTGGATGACGACTGGGAGCATTCCCGCAGGTTCAGGCATTTGTAAAGAGTGACCGGCCTGCGGCTTTCCCAAATCTTACCATTAAGTATGTAAGAGGTGCAGATCCCATCATTAAGTTGATGGATGAGGATGGCGATGTTATGGAAACATTGGCAATCGATAAATGGAACACCGATTCCGNGGAGGAGTTCCTTAATACCTATCTTATACTGCCAGGACAAAGAGGAAGAAGCAGATGATTTTGAAGAATCTAACCTTTTATAATGACTGTTACATAACCATGGCCTTTAATGATTTTTATCCATCGAGAATTTAAAGAAGAAAATTTGNTATAATATTTCGTACTTAGATACCCTCGGTTTTATACATTATATAGTAATTCTATTTAAGNGCATTTGGTTAAAAATTTTGCAAAGNAAATNCCTTTTTTTTTTTTTTTGGCNTTCNTTTTTTTCTTTTTTTTTCCCTTTTGGANACCCCCTTTTATAANANCAAAGAAATTGGCCAAAACTTTCCATTTTGTTTAAAGGTTNAAAAAAGGTTTTGAAAAAANAATTNTTGGTGTGGNGGGGCCATTCCGNAGTGTTTTNT |
|
| 15 |
1 |
1 |
1 |
15 |
5920 |
3750 |
4921 |
BF023950 |
GGGGGAGGAACAACAACTCAGCCGAGTCGTCCTCACCATGATGGTCGACCCCGGCGGGATAGGCCTNTTTATAGCGGCCACGCTGTTGTCCATAGTGGAGGCAGTGCAGGAGCTGTCCACAGAGGAATGCTTCGCTGTCGGCCTGAACAAGGCTAACCTCCTGTGCTCTTCTTGTGATACTCTCAAGGAGTTCAACCTTGATGTGTTGGAGGCAAATTGCCGNGGGTGCTGCAATGTGGATGACGTAAATGCCACCCCAACGAAGTACCCGCGGGCCATCCTCGAGGTCTGTGGATGACGACTGGGAGCATTCCCGCAGGTTCAGGCATTTGTAAAGAGTGACCGGCCTGCGGCTTTCCCAAATCTTACCATTAAGTATGTAAGAGGTGCAGATCCCATCATTAAGTTGATGGATGAGGATGGCGATGTTATGGAAACATTGGCAATCGATAAATGGAACACCGATTCCGNGGAGGAGTTCCTTAATACCTATCTTATACTGCCAGGACAAAGAGGAAGAAGCAGATGATTTTGAAGAATCTAACCTTTTATAATGACTGTTACATAACCATGGCCTTTAATGATTTTTATCCATCGAGAATTTAAAGAAGAAAATTTGNTATAATATTTCGTACTTAGATACCCTCGGTTTTATACATTATATAGTAATTCTATTTAAGNGCATTTGGTTAAAAATTTTGCAAAGNAAATNCCTTTTTTTTTTTTTTTGGCNTTCNTTTTTTTCTTTTTTTTTCCCTTTTGGANACCCCCTTTTATAANANCAAAGAAATTGGCCAAAACTTTCCATTTTGTTTAAAGGTTNAAAAAAGGTTTTGAAAAAANAATTNTTGGTGTGGNGGGGCCATTCCGNAGTGTTTTNT |
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| 16 |
1 |
1 |
1 |
16 |
6230 |
3740 |
4962 |
BF023991 |
GGGGGGATCGCCTCTGATGTCCGTGTAAATAAAAATAATNGGTCTGGATTATCTGTGGCAGCAAAAATGTTNGGAAATGGATGTGTATATATTCTCAATTTTTAAAGGACTTCATTTTTAATTTTCTAGATTTTTTTTTTAAAGCTATGCATTCTATATGNGTATTATGGTTTATATNCCATCTGTATGTTGCAGAANGGAATTTAAAAAAATATATTATTGAAGTAAGNGAGATGACATAAGTCTCCATTTTCACTCCCTTNGCTGCCAATTTACAATCCCATCTGCTTGAATGCTGAATGGAATAAGGATNCCAGACTCAAACC |
|
| 17 |
1 |
1 |
1 |
17 |
6450 |
3720 |
landing |
|
|
-- landing |
| 18 |
1 |
1 |
2 |
1 |
2480 |
4020 |
landing |
|
|
-- landing |
| 19 |
1 |
1 |
2 |
2 |
2710 |
4000 |
4962 |
BF023991 |
GGGGGGATCGCCTCTGATGTCCGTGTAAATAAAAATAATNGGTCTGGATTATCTGTGGCAGCAAAAATGTTNGGAAATGGATGTGTATATATTCTCAATTTTTAAAGGACTTCATTTTTAATTTTCTAGATTTTTTTTTTAAAGCTATGCATTCTATATGNGTATTATGGTTTATATNCCATCTGTATGTTGCAGAANGGAATTTAAAAAAATATATTATTGAAGTAAGNGAGATGACATAAGTCTCCATTTTCACTCCCTTNGCTGCCAATTTACAATCCCATCTGCTTGAATGCTGAATGGAATAAGGATNCCAGACTCAAACC |
|
| 20 |
1 |
1 |
2 |
3 |
2950 |
3990 |
4999 |
BF024028 |
GGGCAAGCTCCGGTAGAGACAACTAAAACACAAGCTCCGGTGGNGACAACTAAAACACCAGCTCCGGTNGAGACAACAGAAGTACCACCTGGCCCAAAGTCTTTTGATGAGACAAAAGCCTCCTCAAGTGAACCATCCCAACCGTCCTCGAGCGNGGAGCCGCAAACCTCCACAAGTGAACCATCCCAATCCTNTTCAAGCGAACAGCCTCAGACCTNCTNGAGCGCACCCACAACAACCATCCCACCCACTCCCGTNTGCATAACGAACGAGACATCGAGCGGTAACGACGCAGACCTGTGCGAGCGCCTGACTTCGGTCCTGGAAGACATCGAGGCCGTTACGAGCACCGTGGCCTAGGGAACCATGGGCCAGGCTGAATTGGACGACCTGNGGAACTGCTCCACGAGGCTTGACNTGTGATTGAGGACATGCGCAACAACACAGACTTTCTCGCAGCAGCGNTNACGTTTANGAGCTGATTGNGAGGGAAGATGCTCTTTNCGAGGNGCTGCCNGGAGCCGAAAAACANNGGAAGATGCCTGTNACANNTGGCNTCCACCCGCNCTTGGCATNGTTTTG |
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Total number of rows: 13056
Table truncated, full table size 6385 Kbytes.
| Supplementary data files not provided |
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