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| Status |
Public on Jun 01, 2006 |
| Title |
BA82_40_U3_75_export |
| Sample type |
RNA |
| |
|
| Source name |
MGMA_364
|
| Organism |
Penaeus vannamei |
| Characteristics |
hepatopancreas, biosecure recirculating artificial seawater, adult, hepatopancreas, KONA
|
| Treatment protocol |
untreated control
|
| Extracted molecule |
total RNA |
| Label |
CY3
|
| |
|
| Hybridization protocol |
33% formamide, 2.6X SSPE, 2.4% SDS, 1.7X Denhardts
|
| Description |
None
|
| Data processing |
Ch1 Intensities read directly from the Microarray scanner.
|
| |
|
| Submission date |
May 30, 2006 |
| Last update date |
May 31, 2006 |
| Contact name |
MarineGenomics Project |
| E-mail(s) |
info@marinegenomics.org
|
| Phone |
843-762-8869
|
| Fax |
843-762-8847
|
| URL |
http://www.marinegenomics.org
|
| Organization name |
MarineGenomics.org
|
| Lab |
HML
|
| Street address |
331 Fort Johnson Rd
|
| City |
Charleston |
| State/province |
SC |
| ZIP/Postal code |
29412 |
| Country |
USA |
| |
|
| Platform ID |
GPL3817 |
| Series (1) |
| GSE4955 |
Profiling of WSSV infection in hepatopancreas of shrimp |
|
| Data table header descriptions |
| ID_REF |
Incremental generic ID Number |
| VALUE |
Ch1 Intensity raw intensity values |
| ch1 Background |
ch1 Background |
| ch1 Intensity Std Dev |
ch1 Intensity Std Dev |
| ch1 Background Std Dev |
ch1 Background Std Dev |
| ch1 Diameter |
ch1 Diameter of spot |
| ch1 Area |
ch1 Area of spot |
| ch1 Footprint |
ch1 Footprint of spot |
| ch1 Circularity |
ch1 Circularity of spot |
| ch1 Spot Uniformity |
ch1 Spot Uniformity |
| ch1 Bkg. Uniformity |
ch1 Bkg. Uniformity |
| ch1 Signal Noise Ratio |
ch1 Signal Noise Ratio |
| ch1 Confidence |
ch1 Confidence |
| Ignore Filter |
ignore filter indicator |
| Data table |
| ID_REF |
VALUE |
ch1 Background |
ch1 Intensity Std Dev |
ch1 Background Std Dev |
ch1 Diameter |
ch1 Area |
ch1 Footprint |
ch1 Circularity |
ch1 Spot Uniformity |
ch1 Bkg. Uniformity |
ch1 Signal Noise Ratio |
ch1 Confidence |
Ignore Filter |
| 1 |
653.647034 |
152.588242 |
225.118088 |
4.534473 |
265.469055 |
10200 |
21.732906 |
0.887931 |
0.984573 |
0.999771 |
144.150608 |
1 |
1 |
| 2 |
660.15686 |
152.833328 |
255.063873 |
4.231151 |
279.828949 |
10200 |
29.472055 |
0.82735 |
0.98291 |
0.999771 |
156.022993 |
1 |
1 |
| 3 |
627.901978 |
153.058823 |
224.575043 |
3.432009 |
275.009888 |
10200 |
27.363955 |
0.857803 |
0.984299 |
0.999802 |
182.954656 |
1 |
1 |
| 4 |
474.892151 |
152.784317 |
84.345459 |
4.147354 |
273.966217 |
10200 |
30.02969 |
0.854947 |
0.995392 |
0.999786 |
114.50486 |
1 |
1 |
| 5 |
470.970581 |
151.607849 |
91.10569 |
3.203207 |
265.948242 |
10200 |
39.455189 |
0.889432 |
0.99472 |
0.999817 |
147.030975 |
1 |
1 |
| 6 |
4945.60791 |
157.009811 |
4734.724609 |
4.118289 |
243.191254 |
10200 |
44.600239 |
0.878654 |
0.791519 |
0.999786 |
1200.889129 |
1 |
1 |
| 7 |
5437.911621 |
156.862747 |
5091.359375 |
4.328216 |
247.344238 |
10200 |
28.353291 |
0.83373 |
0.779572 |
0.999771 |
1256.386494 |
1 |
1 |
| 8 |
507.57843 |
152.57843 |
94.086693 |
4.106108 |
270.340454 |
10200 |
2.965657 |
0.865632 |
0.994858 |
0.999771 |
123.615455 |
1 |
1 |
| 9 |
507.107849 |
153.352936 |
96.346619 |
4.004075 |
274.314545 |
10200 |
7.418457 |
0.877957 |
0.994766 |
0.999802 |
126.647953 |
1 |
1 |
| 10 |
502.852936 |
153.617645 |
98.455338 |
3.523736 |
268.686981 |
10200 |
27.812471 |
0.867379 |
0.994919 |
0.999786 |
142.704486 |
1 |
1 |
| 11 |
518.539246 |
153.215683 |
87.356293 |
4.565535 |
277.544617 |
10200 |
36.099495 |
0.804678 |
0.994843 |
0.999756 |
113.576896 |
1 |
1 |
| 12 |
947.019592 |
153.725494 |
337.218872 |
4.492363 |
258.174561 |
10200 |
46.203323 |
0.906175 |
0.980469 |
0.999756 |
210.806562 |
1 |
1 |
| 13 |
758.598022 |
153.264709 |
240.426071 |
3.486683 |
268.80542 |
10200 |
64.957085 |
0.879615 |
0.986984 |
0.999817 |
217.570107 |
1 |
1 |
| 14 |
642.15686 |
153.382355 |
192.482574 |
4.162644 |
275.12561 |
10200 |
54.402527 |
0.854403 |
0.98877 |
0.999771 |
154.266585 |
1 |
1 |
| 15 |
749.823547 |
156.323532 |
231.305573 |
4.4347 |
268.212708 |
10200 |
45.398464 |
0.850735 |
0.985382 |
0.999771 |
169.08099 |
1 |
1 |
| 16 |
1273.196045 |
154.627457 |
611.130493 |
4.908916 |
265.948242 |
10200 |
66.935631 |
0.893658 |
0.969971 |
0.999741 |
259.363991 |
1 |
1 |
| 17 |
619.15686 |
152.42157 |
152.597229 |
3.966284 |
277.773895 |
10200 |
39.351089 |
0.829422 |
0.989716 |
0.999786 |
156.105014 |
1 |
1 |
| 18 |
675.372559 |
153.058823 |
249.641327 |
4.702693 |
273.268219 |
10200 |
50.964035 |
0.849083 |
0.98201 |
0.999771 |
143.614016 |
1 |
1 |
| 19 |
1292.980347 |
152.196075 |
631.762207 |
4.443349 |
272.217834 |
10200 |
55.130405 |
0.874361 |
0.969482 |
0.999756 |
290.992308 |
1 |
1 |
| 20 |
10612.80371 |
156.588242 |
9475.96582 |
4.597358 |
222.551178 |
10200 |
37.128983 |
0.853942 |
0.608307 |
0.999756 |
2308.456985 |
1 |
1 |
Total number of rows: 13056
Table truncated, full table size 1463 Kbytes.
| Supplementary data files not provided |
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