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Platform GPL5046 Query DataSets for GPL5046
Status Public on Oct 22, 2007
Title nhgri_qiagenv3_cgh
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer NHGRI microarray core facility
Manufacture protocol Qiagen/operon version 3, robotically spotted onto glass
 
Description 36288 spots
nt coordinates correspond to hg16 (UCSC) or build 34 (NCBI)
 
Submission date Mar 27, 2007
Last update date Oct 22, 2007
Contact name Sean Davis
E-mail(s) sdavis2@mail.nih.gov
Phone 301-435-2652
Organization name National Cancer Institute
Lab Genetics Branch
Street address 37 Convent Drive, Room 6138
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (11) GSM177474, GSM177475, GSM177476, GSM177477, GSM177478, GSM177479 
Series (1)
GSE7376 Detection of novel amplification units in prostate cancer

Data table header descriptions
ID
CloneID Oligo ID from Qiagen
PlatePos Plate position
ORF Entrez Gene ID
Chr Chromosome
ChrStart Chromosome start location for best blat hit
ChrEnd Chromosome end position for best blat hit
GeneHits Number of unique genes which the probe potentially hits
GeneSymbol HUGO gene symbol
GeneName Gene definintion
SPOT_ID
GB_RANGE

Data table
ID CloneID PlatePos ORF Chr ChrStart ChrEnd GeneHits GeneSymbol GeneName SPOT_ID GB_RANGE
24 H300015533 HV3.01A24 84254 17 3975474 3975544 1 CAMKK1 calcium/calmodulin-dependent protein kinase kinase 1, alpha NC_000017.8[3975474..3975544]
12 H200000226 HV3.01A12 2288 12 2782962 2783031 2 FKBP4 FK506 binding protein 4, 59kDa NC_000012.8[2782962..2783031]
120 H300013738 HV3.01E24 7982 7 116392877 116392947 1 ST7 suppression of tumorigenicity 7 NC_000007.10[116392877..116392947]
108 H300016407 HV3.01E12 3 50338695 50338765 1 NC_000003.8[50338695..50338765]
216 H300010851 HV3.01I24 4222 17 42196123 42196193 1 MEOX1 mesenchyme homeo box 1 NC_000017.8[42196123..42196193]
204 H200016156 HV3.01I12 3207 7 26966928 26966997 1 HOXA11 homeo box A11 NC_000007.10[26966928..26966997]
312 H300018387 HV3.01M24 9256 17 56857095 56857165 1 BZRAP1 benzodiazapine receptor (peripheral) associated protein 1 NC_000017.8[56857095..56857165]
300 H200010569 HV3.01M12 4763 17 29833215 29833284 1 NF1 neurofibromin 1 (neurofibromatosis, von Recklinghausen disease, Watson disease) NC_000017.8[29833215..29833284]
408 H200002827 HV3.02A24 51603 1 169005849 169005918 1 CGI-01 CGI-01 protein NC_000001.7[169005849..169005918]
396 H200017528 HV3.02A12 10048 6 13730600 13730669 1 RANBP9 RAN binding protein 9 NC_000006.8[13730600..13730669]
504 H200019995 HV3.02E24 3 52470438 52470507 1 NC_000003.8[52470438..52470507]
492 H200002595 HV3.02E12 56953 17 17451314 17451383 1 NT5M 5,3-nucleotidase, mitochondrial NC_000017.8[17451314..17451383]
600 H300022292 HV3.02I24 3077 6 26204705 26204775 1 HFE hemochromatosis NC_000006.8[26204705..26204775]
588 H300011466 HV3.02I12 695 X 99382930 99383000 1 BTK Bruton agammaglobulinemia tyrosine kinase NC_000023.7[99382930..99383000]
696 H300012994 HV3.02M24 54903 17 56770655 56770725 1 FLJ20345 hypothetical protein FLJ20345 NC_000017.8[56770655..56770725]
684 H200012859 HV3.02M12 10867 12 3262751 3262820 1 NET-5 transmembrane 4 superfamily member tetraspan NET-5 NC_000012.8[3262751..3262820]
792 H200004982 HV3.03A24 9821 8 53585625 53585694 1 RB1CC1 RB1-inducible coiled-coil 1 NC_000008.8[53585625..53585694]
780 H300011928 HV3.03A12 57476 11 123021759 123021829 1 KIAA1201 KIAA1201 protein NC_000011.7[123021759..123021829]
888 H200002468 HV3.03E24 23304 6 42707378 42707447 1 C6orf133 chromosome 6 open reading frame 133 NC_000006.8[42707378..42707447]
876 H300002390 HV3.03E12 51802 4 157328661 157328731 1 ACCN5 amiloride-sensitive cation channel 5, intestinal NC_000004.8[157328661..157328731]

Total number of rows: 36288

Table truncated, full table size 4125 Kbytes.






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