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Platform GPL5048 Query DataSets for GPL5048
Status Public on Apr 17, 2007
Title University of Groningen Lactococcus lactis MG1363 amplicon 5K
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Lactococcus cremoris subsp. cremoris MG1363
Manufacturer University of Groningen
Manufacture protocol Amplicon spotted on ArrayIt Superamine slides in duplicates
Support glass
Coating aminosilane
 
Description LOCUS AM406671 2529478 bp DNA circular BCT 31-JAN-2007
DEFINITION Lactococcus lactis subsp. cremoris MG1363, complete genome.
ACCESSION AM406671
VERSION AM406671.1 GI:124491690
KEYWORDS complete genome.
SOURCE Lactococcus lactis subsp. cremoris MG1363
The complete genome sequence of the lactic acid bacterial paradigm Lactococcus lactis subsp. cremoris MG1363.
J Bacteriol. 2007 Feb 16
 
Contributor(s) de Jong A, Kuipers O, Kok J
Citation(s) 17307855
Submission date Mar 28, 2007
Last update date Apr 17, 2007
Contact name Anne de Jong
E-mail(s) anne.de.jong@rug.nl
Phone +31 50 363 2047
Organization name university of Groningen
Department Molecular Genetics
Street address Nijenborgh 7
City Groningen
ZIP/Postal code 9747 AG
Country Netherlands
 
Samples (17) GSM177831, GSM177832, GSM177833, GSM233246, GSM233247, GSM233248 
Series (4)
GSE7386 SpxB regulates O-acetylation dependent resistance of Lactococcus lactis peptidoglycan to hydrolysis
GSE9168 LmrR Lactococcus lactis MG1363
GSE10203 L. lactis ΔlmrCD and cholate-adapted L. lactis ΔlmrCDR

Data table header descriptions
ID
LOCUS Locus name corresponding to the amplicon
LOCUS_ID Locus reference ID
PT_GI Protein Genbank GI number for the gene corresponding to the amplicon
DESCRIPTION Description of th gene corresponding to the amplicon
AMPLICON Name of the amplicon
REPLICATE Replicate ID of the spot
ROW Spot row number in grid
COLUMN Spot Column number in grid
GRID Grid number
SEQUENCE DNA sequence of the amplicon
ORF Locus tag
GENOME_ACC Lactococcus lactis subsp. cremoris MG1363, complete genome
SPOT_ID spot identifier

Data table
ID LOCUS LOCUS_ID PT_GI DESCRIPTION AMPLICON REPLICATE ROW COLUMN GRID SEQUENCE ORF GENOME_ACC SPOT_ID
__MG1029_a missing/bad MG1029 a 1 15 3 aaggcgatgagcagggcaagaataatcaggggaaaggtgatggacgcacgtgcgcctaccaaggaggttacggagcgaccagtcaggattgaagtgccgaagtcaccacgggccagcgcactcatccaatcgaagtattgtgcaatcaatggccgattcagaccgagttgttcgcgtagctgggtcacacgctcaggcggcgagttgacgccggccatcacggaggccacatcgccaggcagaatgcgcaatgctgcaaaaaccaccacggacaggccgaacaacgccaccacgaataacgccagccgtttcaacacgaatcgcataatgcctactttacttggattaacaatgagccccctcactgagggagctcattgctgtaacgaactacttcgtgtaggtcacgttgtagaggggcagaacggtctggttgaggtcgaaggggaatccttcaacgcccttggccgtggcggtggtgatgcggtagttgaacagccagtcggccggcgcatcctcggagacaagcttggcggccgcggcgaacttggcatcacgctccttgtcggaggtggcggcaacaccctcgttgtacagcttggtcacattcttgttgtcgtaaccgaaatagtatgtcggatcggtccacgatgcgaagtcgtggctttcgttgtggtccaccagcgaaatatcgaaggtgtggttggtgtacacatcctgcagccacgtggagaactccaccacattcaccttcaggtcgatgccgatgggcttgagctgggagcgca --missing/bad
__MG1029_b missing/bad MG1029 b 10 15 3 aaggcgatgagcagggcaagaataatcaggggaaaggtgatggacgcacgtgcgcctaccaaggaggttacggagcgaccagtcaggattgaagtgccgaagtcaccacgggccagcgcactcatccaatcgaagtattgtgcaatcaatggccgattcagaccgagttgttcgcgtagctgggtcacacgctcaggcggcgagttgacgccggccatcacggaggccacatcgccaggcagaatgcgcaatgctgcaaaaaccaccacggacaggccgaacaacgccaccacgaataacgccagccgtttcaacacgaatcgcataatgcctactttacttggattaacaatgagccccctcactgagggagctcattgctgtaacgaactacttcgtgtaggtcacgttgtagaggggcagaacggtctggttgaggtcgaaggggaatccttcaacgcccttggccgtggcggtggtgatgcggtagttgaacagccagtcggccggcgcatcctcggagacaagcttggcggccgcggcgaacttggcatcacgctccttgtcggaggtggcggcaacaccctcgttgtacagcttggtcacattcttgttgtcgtaaccgaaatagtatgtcggatcggtccacgatgcgaagtcgtggctttcgttgtggtccaccagcgaaatatcgaaggtgtggttggtgtacacatcctgcagccacgtggagaactccaccacattcaccttcaggtcgatgccgatgggcttgagctgggagcgca --missing/bad
__MG1030_a missing/bad MG1030 a 1 15 7 tgtttccctcgcaagggttcccgctggatggttgggcgcacccggttcggcgatatcagcgttggtattgccggctgtatcggtcggcatcatcgtgggagcatcgcttatgcgatacacgcgcgcggccttaggggatttagccagttccggctacatcgatatggcacgctcgtgtggcatgacgcgcactcaggcggtgttgcgtgtgggattgcggttggcaaccccgcagctggtgtctgttatcgggctgaccttcgcttcgatggtcactggcgtgatggtcatcgaaaacctgtttgcgttaccgggcatcggcaacggtcttgtgaccgacgtgggcaaccgcgacctgattgccgtgcaaagcgagctgttcctgctggccgcgttctttttgactgtcggcctcgtggtcgatttgttccaccgcgtgctcgacccgcgtctgaaaaccgctaccgccattacggaggtgaccgcatgagcaatgttcgtcgtgcgacgactggtggtcgacgggctgccttcgtcatcgtcctgcactctatgtggcgtcgtgccgagggcaaattcgcacttatcgtgctcgctctgtggttgctcattgccatcgtttccctgttctggaccccgcaatcgctgtgggccactgatggctaccatgtatgggccaagccgtccgccgagcactggctcggcactgacggcaccggcgcggacgtgttcagctggctgctggccggctcacataccaatcttgtgatcgtgctgctgaccgtagt --missing/bad
__MG1030_b missing/bad MG1030 b 10 15 7 tgtttccctcgcaagggttcccgctggatggttgggcgcacccggttcggcgatatcagcgttggtattgccggctgtatcggtcggcatcatcgtgggagcatcgcttatgcgatacacgcgcgcggccttaggggatttagccagttccggctacatcgatatggcacgctcgtgtggcatgacgcgcactcaggcggtgttgcgtgtgggattgcggttggcaaccccgcagctggtgtctgttatcgggctgaccttcgcttcgatggtcactggcgtgatggtcatcgaaaacctgtttgcgttaccgggcatcggcaacggtcttgtgaccgacgtgggcaaccgcgacctgattgccgtgcaaagcgagctgttcctgctggccgcgttctttttgactgtcggcctcgtggtcgatttgttccaccgcgtgctcgacccgcgtctgaaaaccgctaccgccattacggaggtgaccgcatgagcaatgttcgtcgtgcgacgactggtggtcgacgggctgccttcgtcatcgtcctgcactctatgtggcgtcgtgccgagggcaaattcgcacttatcgtgctcgctctgtggttgctcattgccatcgtttccctgttctggaccccgcaatcgctgtgggccactgatggctaccatgtatgggccaagccgtccgccgagcactggctcggcactgacggcaccggcgcggacgtgttcagctggctgctggccggctcacataccaatcttgtgatcgtgctgctgaccgtagt --missing/bad
__MG1040_a missing/bad MG1040 a 3 9 5 tcgatgcaaaaatcttcgactccgatattttcttggttctttatcttattactccttgttttattagtcttcacagtttttgttggattgattaatattaagttcagatttagaatgcgagatatgtttaaaatcagtctggtttggacaatggcttttccaagttcgatcattaaagttattatattaagcctaggattattaggaatcatgttttttgtgagtggttttttgattttcgttttaagcagcacttatctttatcttatctgctacgaatcaactaaaatgctagattgggtctggaataattatacgcaggaaggtaagagta --missing/bad
__MG1040_b missing/bad MG1040 b 12 9 5 tcgatgcaaaaatcttcgactccgatattttcttggttctttatcttattactccttgttttattagtcttcacagtttttgttggattgattaatattaagttcagatttagaatgcgagatatgtttaaaatcagtctggtttggacaatggcttttccaagttcgatcattaaagttattatattaagcctaggattattaggaatcatgttttttgtgagtggttttttgattttcgttttaagcagcacttatctttatcttatctgctacgaatcaactaaaatgctagattgggtctggaataattatacgcaggaaggtaagagta --missing/bad
__MG150030_a missing/bad MG150030 a 3 14 19 caagttttacttggaagtagtaaaatattaggatataatcaaagtatgagaaaaacagatagagatcctcttgcttatggtgccggggtgagcagtga --missing/bad
__MG150030_b missing/bad MG150030 b 12 14 19 caagttttacttggaagtagtaaaatattaggatataatcaaagtatgagaaaaacagatagagatcctcttgcttatggtgccggggtgagcagtga --missing/bad
__MG150031_a missing/bad MG150031 a 3 10 15 gaatcacagcttttggacctactatgattttcatcaccgaagcctctcttggcaaacggttaatgtttgtcataacag --missing/bad
__MG150031_b missing/bad MG150031 b 12 10 15 gaatcacagcttttggacctactatgattttcatcaccgaagcctctcttggcaaacggttaatgtttgtcataacag --missing/bad
__MG150032_a missing/bad MG150032 a 5 15 13 ttgaaagtgttagaaaaaattaaattaacaactggagtgataaataaatttattatcatttacatgtttattggtggtatattgggcggggtgttgggttatttttttgtaaaattta --missing/bad
__MG150032_b missing/bad MG150032 b 14 15 13 ttgaaagtgttagaaaaaattaaattaacaactggagtgataaataaatttattatcatttacatgtttattggtggtatattgggcggggtgttgggttatttttttgtaaaattta --missing/bad
__MG150051_a missing/bad MG150051 a 5 14 13 tagagcatttgactgttaatcaaagggtcgctggttcgagcccagcacgggtcactaaatttattgaagaaaagattgtggggatggctcacaattttttcttatttttgaaaaaatatttctcaaagtttagagaaaacaacggtaaaag --missing/bad
__MG150051_b missing/bad MG150051 b 14 14 13 tagagcatttgactgttaatcaaagggtcgctggttcgagcccagcacgggtcactaaatttattgaagaaaagattgtggggatggctcacaattttttcttatttttgaaaaaatatttctcaaagtttagagaaaacaacggtaaaag --missing/bad
__MG150055_a missing/bad MG150055 a 3 13 19 agaccagcaacaacgtctagccttacaggataaaaaattactagaagagtataaattagaaatcaatgaattgaaagctcttaaaatgcctcaggaggatatgaaagatggctcgtcgataaggggtgagg --missing/bad
__MG150055_b missing/bad MG150055 b 12 13 19 agaccagcaacaacgtctagccttacaggataaaaaattactagaagagtataaattagaaatcaatgaattgaaagctcttaaaatgcctcaggaggatatgaaagatggctcgtcgataaggggtgagg --missing/bad
__MG150058_a missing/bad MG150058 a 2 9 13 cacaaaaacaacaaaaaaagagcaatcatcataagatgattgctctaaaaaactgtagtatttttggccaaatttttaattttttcaa --missing/bad
__MG150058_b missing/bad MG150058 b 11 9 13 cacaaaaacaacaaaaaaagagcaatcatcataagatgattgctctaaaaaactgtagtatttttggccaaatttttaattttttcaa --missing/bad
__MG150069_a missing/bad MG150069 a 5 14 17 atggccaaaacaaaaacaacaaaaaacaaaactcaaaaaactaatactaaagcagcaaaaacccctaaagtaactaaaactaaggcaaaaactgcttctaaaacagctactaccaaaaagaaagtagtcaaaaaaccagtaacaaaaacaaaaaaatc --missing/bad
__MG150069_b missing/bad MG150069 b 14 14 17 atggccaaaacaaaaacaacaaaaaacaaaactcaaaaaactaatactaaagcagcaaaaacccctaaagtaactaaaactaaggcaaaaactgcttctaaaacagctactaccaaaaagaaagtagtcaaaaaaccagtaacaaaaacaaaaaaatc --missing/bad

Total number of rows: 5380

Table truncated, full table size 3304 Kbytes.






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