GEO help: Mouse over screen elements for information.
Status
Public on May 30, 2007
Title
VIMSS Desulfovibrio vulgaris Hildenborough 7K v2.0
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Nitratidesulfovibrio vulgaris str. Hildenborough Manufacturer
Joe Zhou
Manufacture protocol
Thompson, D., Beliaev, A., Giometti, C., Tollaksen, S.,Khare, T., Lies, D., Nealson, K., Lim, H., Yates, J., Brandt, C. Tiedje, J., and Zhou, J. 2002. Transcriptional and Proteomic Analysis of a Ferric Uptake Regulator (Fur) Mutant of Shewanella oneidensis: Possible Involvement of Fur in Energy Metabolism, Transcriptional Regulation, and Oxidative Stress. Appl. Environ. Microbiol. 68:881-892.
Contributor(s)
Arkin AP , Joachimiak MP Submission date
May 23, 2007
Last update date
Feb 16, 2012
Contact name
Adam P. Arkin
E-mail(s)
mjoachimiak@lbl.gov Phone
(510) 495-2366
Fax
(510) 486-6219
URL
http://vimss.lbl.gov Organization name
Virtual Institute for Microbial Stress and Survival
Department
Physical Biosciences Division
Lab
Lawrence Berkeley National Laboratory
Street address
1 Cyclotron Road
City
Berkeley
State/province
CA
ZIP/Postal code
94720
Country
USA
Samples (76)
GSM194099 , GSM194100 , GSM194101 , GSM194102 , GSM194103 , GSM202378
GSM202379 ,
GSM202381 ,
GSM202383 ,
GSM202385 ,
GSM216491 ,
GSM216492 ,
GSM216493 ,
GSM358757 ,
GSM501792 ,
GSM501793 ,
GSM501794 ,
GSM501795 ,
GSM501796 ,
GSM501797 ,
GSM501798 ,
GSM501799 ,
GSM501800 ,
GSM502062 ,
GSM502063 ,
GSM502064 ,
GSM502065 ,
GSM502066 ,
GSM502067 ,
GSM502068 ,
GSM502069 ,
GSM502070 ,
GSM726148 ,
GSM726149 ,
GSM726150 ,
GSM726151 ,
GSM726152 ,
GSM741176 ,
GSM741177 ,
GSM741178 ,
GSM741179 ,
GSM741180 ,
GSM741181 ,
GSM741182 ,
GSM741183 ,
GSM741184 ,
GSM741185 ,
GSM741186 ,
GSM741187 ,
GSM741188 ,
GSM741189 ,
GSM741190 ,
GSM741191 ,
GSM746714 ,
GSM746715 ,
GSM746716 ,
GSM746717 ,
GSM746718 ,
GSM746719 ,
GSM746720 ,
GSM746721 ,
GSM746722 ,
GSM746723 ,
GSM746724 ,
GSM746725 ,
GSM876991 ,
GSM876992 ,
GSM977400 ,
GSM977401 ,
GSM977402 ,
GSM977403 ,
GSM977404 ,
GSM977405 ,
GSM977406 ,
GSM977407 ,
GSM977408 Series (13)
GSE7816 Cell wide response to low oxygen exposure in Desulfovibrio vulgaris Hildenborough
GSE8196 Cell wide response to air exposure in Desulfovibrio vulgaris Hildenborough
GSE8197 pH stress in Desulfovibrio vulgaris Hildenborough
GSE14343 Salt/NaCl stress in Desulfovibrio vulgaris Hildenborough
GSE14345 Hydrogen peroxide Stress in Desulfovibrio vulgaris Hildenborough (REPLACED BY GSE21441)
GSE14355 Hydrogen peroxide Stress in Desulfovibrio vulgaris Hildenborough (REPLACED BY GSE21438)
GSE20079 Nitrate Stress in Desulfovibrio vulgaris Hildenborough
GSE20092 Nitrate Stress in Desulfovibrio vulgaris Hildenborough (Fur knockout : JW707)
GSE21438 Hydrogen peroxide Stress in Desulfovibrio vulgaris Hildenborough
GSE21441 Peroxide stress in Desulfovibrio vulgaris Hildenborough
GSE29380 Different Mutants in Desulfovibrio vulgaris Hildenborough
GSE35883 Transcriptomic analysis of mature Desulfovibrio vulgaris biofilm
GSE39675 Using data from microarray experiments, we investigated the transcriptional changes in evolved and ancestor D. vulgaris strains.
Data table header descriptions ID ORF ORF_NUMBER SEQUENCE SPOT_ID spot identifier
Data table ID ORF ORF_NUMBER SEQUENCE SPOT_ID 207008
YP_010779 ORF01514
CCTACGGTTCCCCGACCTTTCCGGGGGTCATGTTCATGCTGGCGTACCTGAACGACATCCCTGTTCTCGG
206984
YP_010755 ORF01469
CCGGCTGATGTCGACCTGTTCGACCCCGAGGACAATATCAGGTACGGGATAGCGTATCTGCATCTTCTGC
207055
YP_010823 ORF01588
TCCCTGCGCGAAAGGCACGCTTTCCTCCCGTCGCATTATCCTCTATGATGACCACGAACAACCTGCCGTC
207031
YP_010799 ORF01550
ATTCGTCGGTTCGGACCATGCGGGTTTCGCCCTCAAGCAGAGCATCGTCGACAGCCTTCGCAACGCAGGA
207006
YP_010777 ORF01511
TTCCCGTTCACTACACCGAAAAGGCCGCAGCCCTCATGGAGGAAAGGCGCATCCTCGACAGTGACGTCCG
206982
YP_010753 ORF01465
GTTCGTCCGTATGGCCGGGATGATAGAGAAGGCCTTTGCACCGGAACATGTGGCAGGTCTGGCCTATTTC
206591
YP_010372 ORF00850
GTTACGCCTTCCGCGACAAACACACAGCGTCAGAGGCACATCTGCTCATCATACCCGAGCGCCCCATGCC
206565
YP_010350 ORF00816
GTGGGCCTCTTCTCTCCGCAGCAGCTACCCGTCATCATCTACAAAGGATCGCTCCTCTCCCTTGCGGGGA
206639
YP_010419 ORF00923
GCCCTTGACGGTATCAGCCTGACGGTTAATCATTGCGGGCCGGATTTTCTGGAGGTCAACGTCATCCCCG
206615
YP_010394 ORF00884
GCCCCTTCGGTGGCCCCTGCGAATACGAGCTTTACCGGGCAACCAGCGACCCGTGGAACGACCCGCCCTA
206589
YP_010370 ORF00847
TAGTGTGTTATTTCTGGCGGTATGCAACTTGCAAATCGATGACATACTATGGAGGTTCTTATGAGACTTG
206562
YP_010347 ORF00812
TGCTCGCCTCAACCGTCCTTGGTAGCATGCTGGCCCTTTGCGGGCTGACGGGGTGTGCCTCACGTCCTGC
206195
YP_009989 ORF00205
ATCCACCCGCAGCATGGTGACGACTGCGGAACGACGCGTTTTCTCACCACCGATGACGTGCCACGCTTCG
206171
YP_009966 ORF00161
GTACGAATCCACTCTCAATGGGGCACCCGTCCTGAAGATCATCGTCGAAGGCGACAAGAGTCTGCTCAAC
206241
YP_010035 ORF00285
GCTGCTCAGCGACCGAGACCGGAGCGTTGCCGAACACTATGGAGTGCTTCAGATGAAGAGACTCTACGGC
206217
YP_010011 ORF00243
GATATGCCCGTTCGCGCAACGCAGCCCTGTACATAGCCTATTTGCAGTCGTTTTCCAATACATACGGTTC
206193
YP_009987 ORF00202
AAGGCCCTCAGTTCGACGCAGATAGAACTGGAGGTATACGGTGGCCATGTGGTGCTGATGGGCATGGTGC
206169
YP_009964 ORF00158
CGGGGGTGGCTCACGAGATCAATTCTCCTGCCAATGCCATCATCAACTGCGCCGACCTTCTCATGGAGGA
207059
YP_010827 ORF01594
GCTGATGCCATCGTACTCCCCCTGCAAGGACTGAAGGTGCTCTTCACCGGAAGCCTCACCCGTGTGGGAC
207035
YP_010803 ORF01558
CAGGAGGGCAACGTCGGCCTCATGCGCGCGGTGAACAAGTTCGATCCCGAAAAGGGCATCAAGTTCTCGT
3571 340 Kbytes .Supplementary data files not provided
Less...
More...