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| Status |
Public on Mar 12, 2013 |
| Title |
Using data from microarray experiments, we investigated the transcriptional changes in evolved and ancestor D. vulgaris strains. |
| Organism |
Nitratidesulfovibrio vulgaris str. Hildenborough |
| Experiment type |
Expression profiling by array
|
| Summary |
Using data from microarray experiments, we investigated the transcriptional changes in evolved and ancestor D. vulgaris strains. gene expression changes in evolved salt-stressed DvH strain (ES, evolved in LS4D + 100 mM NaCl for 1200 generations), evolved control DvH strain (EC, evolved in LS4D for 1200 generations) and ancestor DvH strain grown in non-stress (LS4D), low salt stress (LS4D + 100 mM NaCl) or high salt stress (LS4D + 250 mM NaCl) conditions
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| Overall design |
Comparison of gene expression in evolved salt-stressed strain (ES, 1200g) to ancestor (An) or evolved control (EC, 1200g) strains at mid-logarithmic phase under standard growth condition with defined medium LS4D, salt stress conditions LS4D+100 mM NaCl or LS4D+250 mM NaCl.
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| Citation(s) |
23575373 |
| |
| Submission date |
Jul 26, 2012 |
| Last update date |
Jun 11, 2013 |
| Contact name |
Adam P. Arkin |
| E-mail(s) |
mjoachimiak@lbl.gov
|
| Phone |
(510) 495-2366
|
| Fax |
(510) 486-6219
|
| URL |
http://vimss.lbl.gov
|
| Organization name |
Virtual Institute for Microbial Stress and Survival
|
| Department |
Physical Biosciences Division
|
| Lab |
Lawrence Berkeley National Laboratory
|
| Street address |
1 Cyclotron Road
|
| City |
Berkeley |
| State/province |
CA |
| ZIP/Postal code |
94720 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL5214 |
VIMSS Desulfovibrio vulgaris Hildenborough 7K v2.0 |
|
| Samples (9)
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| GSM977400 |
DvH_mid-logarithmic phase_ancestor (An) strain grown in LS4D |
| GSM977401 |
DvH_mid-logarithmic phase_ancestor (An) strain grown in LS4D + 100 mM NaCl |
| GSM977402 |
DvH_mid-logarithmic phase_ancestor (An) strain grown in LS4D + 250 mM NaCl |
| GSM977403 |
DvH_mid-logarithmic phase_evolved control (EC) strain grown in LS4D |
| GSM977404 |
DvH_mid-logarithmic phase_evolved control (EC) strain grown in LS4D + 100 mM NaCl |
| GSM977405 |
DvH_mid-logarithmic phase_evolved control (EC) strain grown in LS4D + 250 mM NaCl |
| GSM977406 |
DvH_mid-logarithmic phase_evolved salt stressed (ES) strain grown in LS4D |
| GSM977407 |
DvH_mid-logarithmic phase_evolved salt-stressed (ES) strain grown in LS4D + 100 mM NaCl |
| GSM977408 |
DvH_mid-logarithmic phase_evolved salt-stressed (ES) strain grown in LS4D + 250 mM NaCl |
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| Relations |
| BioProject |
PRJNA171383 |
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