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Platform GPL5277 Query DataSets for GPL5277
Status Public on May 25, 2007
Title AFFY Human Phase3 v1.0 - C44
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard array manufacture protocol.
Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
 
 
Web link http://transcriptome.affymetrix.com/publication/hs_whole_genome
Submission date May 23, 2007
Last update date Jul 30, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (14) GSM191224, GSM191500, GSM191773, GSM192046, GSM192316, GSM192589 
Series (1)
GSE7576 RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID chip_coord_genomic_coord
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x89_y853_chr1_218287 x89_y853 ACAGGCTGTGAAGAAGCTCTATGAC NC_000001.8 218287 218311 +
x1889_y655_chr1_218317 x1889_y655 GGATGTTAAAGCCAACAAGCACCAG NC_000001.8 218317 218341 +
x952_y779_chr1_218387 x952_y779 TCAAGTTTCCGCTGACCACTGAGTC NC_000001.8 218387 218411 +
x206_y331_chr1_218392 x206_y331 TATCATCAAGTTTCCGCTGACCACT NC_000001.8 218392 218416 +
x2490_y183_chr1_218397 x2490_y183 TATGCTATCATCAAGTTTCCGCTGA NC_000001.8 218397 218421 +
x699_y1503_chr1_218550 x699_y1503 GGCCAAGAAGGCAGTGTTGAAAGGT NC_000001.8 218550 218574 +
x506_y1089_chr1_218555 x506_y1089 TTAAAGGCCAAGAAGGCAGTGTTGA NC_000001.8 218555 218579 +
x506_y1089_chr1_510830 x506_y1089 TTAAAGGCCAAGAAGGCAGTGTTGA NC_000001.8 510830 510854 +
x699_y1503_chr1_510835 x699_y1503 GGCCAAGAAGGCAGTGTTGAAAGGT NC_000001.8 510835 510859 +
x2490_y183_chr1_510988 x2490_y183 TATGCTATCATCAAGTTTCCGCTGA NC_000001.8 510988 511012 +
x206_y331_chr1_510993 x206_y331 TATCATCAAGTTTCCGCTGACCACT NC_000001.8 510993 511017 +
x952_y779_chr1_510998 x952_y779 TCAAGTTTCCGCTGACCACTGAGTC NC_000001.8 510998 511022 +
x1889_y655_chr1_511067 x1889_y655 GGATGTTAAAGCCAACAAGCACCAG NC_000001.8 511067 511091 +
x89_y853_chr1_511097 x89_y853 ACAGGCTGTGAAGAAGCTCTATGAC NC_000001.8 511097 511121 +
x684_y1339_chr1_607191 x684_y1339 CTACGTCTATTCCTACTGTAAATAT NC_000001.8 607191 607215 +
x2145_y2147_chr1_983612 x2145_y2147 CCAAGAAACAAAAGCAAAATCGTCC NC_000001.8 983612 983636 +
x1938_y1317_chr1_983617 x1938_y1317 CCTGGCCAAGAAACAAAAGCAAAAT NC_000001.8 983617 983641 +
x461_y1967_chr1_983622 x461_y1967 CGATTCCTGGCCAAGAAACAAAAGC NC_000001.8 983622 983646 +
x2240_y2197_chr1_983627 x2240_y2197 TTAAGCGATTCCTGGCCAAGAAACA NC_000001.8 983627 983651 +
x241_y535_chr1_1313594 x241_y535 GTAGTAGCACTGCTCGGAGAAGGTG NC_000001.8 1313594 1313618 +

Total number of rows: 2933603

Table truncated, full table size 278549 Kbytes.




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Supplementary file Size Download File type/resource
GPL5277.tpmap.bz2 43.1 Mb (ftp)(http) TPMAP

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