NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL5307 Query DataSets for GPL5307
Status Public on May 25, 2007
Title AFFY Human Phase3 v1.0 - C74
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard array manufacture protocol.
Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
 
 
Web link http://transcriptome.affymetrix.com/publication/hs_whole_genome
Submission date May 23, 2007
Last update date Jul 30, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (14) GSM191314, GSM191590, GSM191863, GSM192136, GSM192406, GSM192679 
Series (1)
GSE7576 RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID chip_coord_genomic_coord
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x1243_y947_chr1_218329 x1243_y947 TGTGTTCACTGTGGATGTTAAAGCC NC_000001.8 218329 218353 +
x2172_y1317_chr1_411218 x2172_y1317 TACACATATTCACAATAACTGACAA NC_000001.8 411218 411242 +
x1727_y1971_chr1_419244 x1727_y1971 CTTCCTTATCCTGTGGGGGTTCAGC NC_000001.8 419244 419268 +
x1243_y947_chr1_511055 x1243_y947 TGTGTTCACTGTGGATGTTAAAGCC NC_000001.8 511055 511079 +
x1727_y1971_chr1_650151 x1727_y1971 CTTCCTTATCCTGTGGGGGTTCAGC NC_000001.8 650151 650175 +
x2172_y1317_chr1_658177 x2172_y1317 TACACATATTCACAATAACTGACAA NC_000001.8 658177 658201 +
x573_y1569_chr1_1770071 x573_y1569 CCTACCTTGTTGGTGGTGTAGCTGT NC_000001.8 1770071 1770095 +
x2507_y1883_chr1_1770076 x2507_y1883 CTTGTTGGTGGTGTAGCTGTCCCAG NC_000001.8 1770076 1770100 +
x2216_y287_chr1_1770081 x2216_y287 TGGTGGTGTAGCTGTCCCAGATGAT NC_000001.8 1770081 1770105 +
x1730_y1603_chr1_8051581 x1730_y1603 GGCAAGTTCTTTAGCCTTTGCCTTT NC_000001.8 8051581 8051605 +
x584_y987_chr1_8051688 x584_y987 GTGGAAGCTATCAGGACCAATTACA NC_000001.8 8051688 8051712 +
x1076_y435_chr1_8052034 x1076_y435 AAGCAAGAGAAGAAGCAGAGGCTGT NC_000001.8 8052034 8052058 +
x299_y725_chr1_8052043 x299_y725 GCTTCTTCTCTTGCTTTGTCTCTGG NC_000001.8 8052043 8052067 +
x2164_y1099_chr1_8052046 x2164_y1099 AGACCAGAGACAAAGCAAGAGAAGA NC_000001.8 8052046 8052070 +
x1131_y433_chr1_8052048 x1131_y433 TTCTCTTGCTTTGTCTCTGGTCTGT NC_000001.8 8052048 8052072 +
x1640_y1101_chr1_8052051 x1640_y1101 AGTACAGACCAGAGACAAAGCAAGA NC_000001.8 8052051 8052075 +
x545_y627_chr1_8052056 x545_y627 CCACAAGTACAGACCAGAGACAAAG NC_000001.8 8052056 8052080 +
x1056_y1081_chr1_8052061 x1056_y1081 CTGGCCCACAAGTACAGACCAGAGA NC_000001.8 8052061 8052085 +
x1192_y71_chr1_8052078 x1192_y71 TGGGCCAGCTTAAGCAGCTGAGTAG NC_000001.8 8052078 8052102 +
x419_y2143_chr1_8744782 x419_y2143 AAGGGTTTCTGGCACAGCAGGAACC NC_000001.8 8744782 8744806 +

Total number of rows: 3099064

Table truncated, full table size 295105 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL5307.tpmap.bz2 45.0 Mb (ftp)(http) TPMAP

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap