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Platform GPL531 Query DataSets for GPL531
Status Public on Oct 07, 2003
Title MWG Zebrafish 14K-2 Array
Technology type spotted oligonucleotide
Distribution commercial
Organism Danio rerio
Manufacturer MWG Biotech
Manufacture protocol see manufacturer's web site
 
Description Total number of spots: 14240 (14K-1 Array: 7296; 14K-2 Array: 6944). One oligonucleotide per gene. Additional EST clustering and annotation information. NCBI zebrafish ESTs were clustered with Paracel's transcript assembler (PTA 2.5.9). ORFs were annotated using framefinder (ESTate package 0.5.0) combined with protein similarity searches using BLASTP. Databases searched included genpept (release 128) and pir nref (release 1.0).
 
Web link http://ecom2.mwgdna.com/services/array/download
Submission date Oct 07, 2003
Last update date May 31, 2005
Organization MWG Biotech
E-mail(s) array@mwgbiotech.com
Phone 1-877-MWG-BTEC
Fax 1-336-812-9983
Street address 4170 Mendenhall Oaks Parkway, Suite 160
City High Point
State/province NC
ZIP/Postal code 27265
Country USA
 
Samples (2) GSM287610, GSM287611
Series (1)
GSE11391 Regenerating zebrafish fin fold vs. uncut control

Data table header descriptions
ID
metarow number of subarray row
metacolumn number of subarray column
row number of row within subarray
column number of column within subarray
oligo MWG oligo id
CLONE_ID MWG-assigned id
function gene function

Data table
ID metarow metacolumn row column oligo CLONE_ID function
1.1.1.1 1 1 1 1 mwgzebrafish#07206 DRFRAMEFINDER01696 similar to genpept|u25746|u25746_1 rna helicase - rattus norvegicus
1.1.1.2 1 1 1 2 mwgzebrafish#07210 DRFRAMEFINDER01173 similar to genpept|ab073785|ab073785_1 retinoid x receptor alpha; frxra - paralichthys olivaceus
1.1.1.3 1 1 1 3 mwgzebrafish#07214 DRFRAMEFINDER09021 similar to genpept|bc009171|bc009171_1 hypothetical protein mgc10500 - mus musculus
1.1.1.4 1 1 1 4 mwgzebrafish#07218 DRFRAMEFINDER09008 similar to genpept|al121755|al121755_2 dj680n4.2 ubiquitin-conjugating enzyme e2d 3 homologous to yeast ubc4/5; ube2d3 - homo sapiens
1.1.1.5 1 1 1 5 mwgzebrafish#07334 DRFRAMEFINDER00171 similar to genpept|z54210|z54210_1 glucocorticoid receptor - oncorhynchus mykiss
1.1.1.6 1 1 1 6 mwgzebrafish#07338 DRFRAMEFINDER08213 similar to genpept|ab012580|ab012580_1 eif3 p66 - mus musculus
1.1.1.7 1 1 1 7 mwgzebrafish#07342 DRFRAMEFINDER00447 similar to genpept|ax040070|ax040070_1 unnamed protein product - homo sapiens
1.1.1.8 1 1 1 8 mwgzebrafish#07346 DRFRAMEFINDER08036 similar to genpept|x02916|x02916_2 histone h2b aa 1-124 - oncorhynchus mykiss
1.1.1.9 1 1 1 9 mwgzebrafish#07462 DRFRAMEFINDER08583 similar to genpept|af398883|af398883_1 elmo1 - mus musculus
1.1.1.10 1 1 1 10 mwgzebrafish#07466 DRFRAMEFINDER07592 similar to genpept|x12459|x12459_1 argininosuccinate synthetase aa 1-412 - rattus norvegicus
1.1.1.11 1 1 1 11 mwgzebrafish#07470 DRFRAMEFINDER03355 similar to genpept|ak016921|ak016921_1 snf2 and others n-terminal domain containing protein data source:pfam, source key:pf00176, evidence:iss putative - mus musculus
1.1.1.12 1 1 1 12 mwgzebrafish#07474 DRFRAMEFINDER05715 similar to genpept|af191838|af191838_1 tank binding kinase tbk1; tbk1 - homo sapiens
1.1.1.13 1 1 1 13 mwgzebrafish#07586 DRFRAMEFINDER02236 similar to genpept|d38524|d38524_1 5'-nucleotidase - homo sapiens
1.1.1.14 1 1 1 14 mwgzebrafish#07590 NM_131002_1 lamin b2; lmnb2
1.1.1.15 1 1 1 15 mwgzebrafish#07594 DRFRAMEFINDER08263 similar to genpept|bc002238|bc002238_1 similar to hypothetical protein - mus musculus
1.1.2.1 1 1 2 1 mwgzebrafish#07598 DRFRAMEFINDER03415 6201791 43-613 forward
1.1.2.2 1 1 2 2 mwgzebrafish#07714 DRFRAMEFINDER04209 similar to genpept|l36642|l36642_1 receptor protein-tyrosine kinase; hek11 - homo sapiens
1.1.2.3 1 1 2 3 mwgzebrafish#07718 DRFRAMEFINDER03308 similar to genpept|ak027050|ak027050_1 unnamed protein product - homo sapiens
1.1.2.4 1 1 2 4 mwgzebrafish#07722 DRFRAMEFINDER01791 similar to genpept|af029105|af029105_1 mint1; mint 1 - rattus norvegicus
1.1.2.5 1 1 2 5 mwgzebrafish#07726 DRFRAMEFINDER01798 similar to pir-nref||nf00140145 proline synthetase co-transcribed bacterial homolog protein - homo sapiens

Total number of rows: 7200

Table truncated, full table size 910 Kbytes.




Download family Format
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Supplementary data files not provided

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