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Platform GPL5337 Query DataSets for GPL5337
Status Public on Jun 01, 2007
Title URGV Arabidopsis thaliana 25K CATMA_v2.1
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Arabidopsis thaliana
Manufacturer INRA-URGV (Plant Genomic Research Unit)
Manufacture protocol A.thaliana genes were predicted with Eugene software (Foissac S. et al., Nucleic Acids Res., 2003) and gene-specific sequence tags were automatically designed (Thareau et al. Bioinformatics, 2003 Nov 22). Two rounds of PCR were performed and PCR products were finally purified and dissolved in 50% DMSO in TE at concentrations ranging between 50-200ng/ul and re-arrayed in 1536 microtiter plates. The pins are washed in 0.1% SDS at 50 °C then three times in bi-distilled water. Spotter settings are 45-55% humidity, and a pitch = 180 um. The room temperature is set between 19 and 21 degrees Celsius and below 40 % humidity. The microtiter plates are placed in the biobank. The four trays are cleaned and 100-120 slides placed on them (30 slides per tray). The spotting lasts 25 hours. The slides are stored in the dark in a dry-cabinet for 3 days and UV-cross-linked at 300 mJ. After crosslinking, the slides are stored in the dark in a dry-cabinet.
24576 Gene Specific Tags (GST)
Support glass
Coating aminosilane
 
Description Corning Ultra-GAPS (TM) slides are spotted with 64 pins (8x8) therefore the spotted area is divided into 3 metablocks, each containning 64 blocks of 144 spots (12x12).
The arrray contains 24576 Gene Specific Tags (GST) and 615 Chloroplastic and Mitochondrial Tilling array probes.
 
Web link http://urgv.evry.inra.fr/CATdb
Contributor(s) Bitton F, Renou J, Taconnat L, Thareau V, Hilson P
Submission date May 29, 2007
Last update date Jun 01, 2007
Contact name Frederique Bitton
E-mail(s) bitton@evry.inra.fr
URL http://www.evry.inra.fr
Organization name INRA
Lab URGV
Street address 2 rue Gaston Cremieux
City Evry
ZIP/Postal code 91000
Country France
 
Samples (333) GSM197330, GSM197331, GSM197332, GSM197333, GSM197334, GSM197335 
Series (35)
GSE7972 comparison col0 vs 003d-Study of the function of SCF complexes in Arabidopsis.
GSE7974 comparison ws vs crb (cul3a)-Study of the function of SCF complexes in Arabidopsis.
GSE7977 comparison ws vs haf2_gcn5-histone acetylation required for gene expression during germination

Data table header descriptions
ID
NAME Probe name
SPOT_ID Probe name at CATdb
SEQUENCE Corresponding DNA sequence on genome

Data table
ID NAME SPOT_ID SEQUENCE
1 BAR BAR
2 BT BT
3 C001 C001 GAACGACGGGAATTGAACCCGCGATGGTGAATTCACAATCCACTGCCTTAATCCACTTGGCTACATCCGCCCCTACGCTACTATCTATTCTTTTTTGTATTGTCTAAAAAAAAAAAAAAATACAAATTTCAATAAAAAATAAAAAAAGGTAGCAAATTCCACCTTATTTTTTTTCTAATAAAAAATATATAGTAATTTTTTATTATTTATTATTATTATTTATTATTAATATAATAAATAAAGTAAAATATGATACTCTATAAAAATTTGCTCATTTTTATAGAAAAAAACGAGTAATATAAGCCCTCTTTCTTATTTAAAGAAGGCTTATATTGCTCGTTTTTTACTAAACTAGATCTAGACTAACACTAACGAATTATCCATTTGTAGATGGAGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAA
4 C002 C002 TGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCCAATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACAGAAGTTGCGGTCAATAAGGTAGGGATC
5 C003 C003 TCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTAGTTATCCAGTTACAGAAGCGACCCCATAGGCTTTCGCTTTCGCGTCTCTCTAAAATTGCAGTCATGGTAAAATCCTTGGTTTATTTAATAATCAGGGACTCCCAAGCGCACAAATTCTCTAAGTAGATAATTGAGAGCTTGTTATGAAACAGTATAACATGACTTATATAGCCATGTCAACCAATGTAAAATGGATAAGATCCTTTTAGTTTAGATTCATAAAAAATTTTTTGTAATCGATGAAATAAATTAGAAGCGAATCCACATACATAGAAATAGAATTGCTCTAGGAATATTTTTTCCAAATCATATGAATACGATTGAATACGATCCGTAGTGGGTTGCCCGGGACTCGAACCCGGAACTAGTCGGAT
6 C004 C004 TTGAATACGATCCGTAGTGGGTTGCCCGGGACTCGAACCCGGAACTAGTCGGATGGAGTAGATAATCTCCTTGTTAAAATGAAAAAAAAAAGGTAAAAAACCCCTCCCCAAACCGTGCTTGCATTTTTCATTGCACACAGCTTTCTCTATGTATACATAGAAAACTCAATTTCTTTGGTTCCTTATAAATAGGACTCCAAATTCAATACTCAGTAAATTTAATCGTAGTCTTACTGTATGAACATTTAATAATAGAAATAAAGCACTTTTGATAATAAAAAATAATTGATTTTTTTTGTTATCTCTGCATAAATTTTAATAAATTTCGATTTCATTTATGGGGTCTCAGAACCCAATTATTCATGATTGACCAAATCATTAAGATAAAGAATATCCAAATACCAAATTCGCACTCGATATAATCTTTTAGAAGCATAATAACTTCTTGGGAAGATTAAAGAAAGAACTTGGTCTTCCC
7 C005 C005 TTTCTAGCATTTGACTACGTACCACTAAAGGGTTTAATCGCAAACTTGACAGATAACCCAGAAACTCTAAATTATCTTTAGATAATTGATTTATATTGACCTTTTGCGATTGAAACCATACCGAAAAATAACATTGCCATAAATTAACAAAATAATATTTCCATTTATTCATCAGAAGCGGCGTATCCTTTGTTGCCAGAATGCATCTTCCGTGATATCTAACATAATGTATGAAAGGATCCTTGAGCAACCCTAGGATTGCCGGAAAATTATTAACAAAAACTTTGAAAAAATGGTGTATTTTTCCATAGAATACAATTCGCTCAAAAAGGACTTCATAAGATGTCGATCGTAAATGCGAAGACCGCTTGCGTAGAAAAAAAAAGATGGATTCGTATTCACATACA
8 C006 C006 GGTTCACATCCTTAGTGGGAATAATCAAACGATTCTGTTCATACATTCGCAAAATTAAGCGTTTCGTAATTAGTGAACTATATTTTTTGTCATAATCCGCATTTTCCAAGAAAATATAGCGATTTCTATTTAATCTATTTAAACCATGATCATAAGCAAGTACATAAATATACTCCCGAAAAAAAAGTGGATATAGAAAACTCTGTTGCCGAGCCCCATCGAACTCTAAATATCCTTGAAATTTATCCATTTGGATTGAAATTCGATTTGAACTGAAGGTAAAGTCTTTATTTTCTTGAGTTCTGAAATGACACATAGTGCGATACAGTCAAAATAAGGTATTAGACTACGAAAGCTATAGATATAGATACCTCATAAACAGGTAGACTGCTAACCGGATTCTCTATCTTTAATAGGTTTCTGTTCGTT
9 C007 C007 AGATACCTCATAAACAGGTAGACTGCTAACCGGATTCTCTATCTTTAATAGGTTTCTGTTCGTTATATTATAGAATAACAAAACAAGATTATTAGAAATCCTTTATTTTTTTAACCTAATCGCTCTTTTGATTTTGGAAATATATATATTTTTTATCAATATACTGCTTCTTTTACACACTCCAACCTAATCCAAATGGACTAGTTAAAACAATAATTAGGACTCATGAAAAAATTGATAATAACACGCAAGAAAAAAATGCCTTCCCATACCCGTATTAGGCACTAATCTATTTTTAACATTTAATTAGTTGGGGTAATTTTTCAAATTACGAATGGAAGCTCGTTTCTTTTTTTTTCCTGGAATAAGGAAAACTGGTTTTTTTATCCATCCATTTATATTTATTCACTTGACCCAAATTGGAATTCTTTTTTTTTTTTCGACATCAAAATAAGATTGTACCGATCAGGAAAGCA
10 C008 C008 TTCACTTGACCCAAATTGGAATTCTTTTTTTTTTTTCGACATCAAAATAAGATTGTACCGATCAGGAAAGCAAAAAAAAATGTTATCTGAATTCTCCCTTGATACGACATGCTATTTTTTCCATTCATTCCTTTCAGGATCAGTCGTGGTCTTACAAACTCTACCGCAGATCTGGACGAATCCTTTTCTTCATACAAATGTGTAAAAGATGCTAGTCGCACTTAAAAGCCGAGTACTCTACCGTTGAGTTAGCAACCCCCCCCAAAAAAAAAAGAACGTACTGCAAATATGTAGATACAATCAGAATAAAGAAAAAAATACAGTCGTGTGTGCGTCAGGGATAAATAGATCCATTTATCTATGAGAGAATTATATTTGGTCCATACACTGTTGTCAATATGATTATGAATTTTTCATATAGTCAAAAGAATAGAAAAAATAAATAAATAAAAAAGCTTAACCTCTTGGTTCATTAGTTCATACAATGA
11 C009 C009 AAAGCTTAACCTCTTGGTTCATTAGTTCATACAATGAATGAAAACTAAGCCAGTTCCAGTTAAGGTAATCTCAAATCTTTTTATACTTTTTAGATCCATTTTTTTTATGGCCTTTAATTTTTTATTTTTTTATGATGAAGAAATTATTCATAATAATATAATATTATTATAATATAATAATATATATATATTTTTTTTTATTCAGAATTATATATTATATTTATATACAGTATTATTCTTTTCTATATAACAATAACAGTAAAATTTTGTATTTATAAAAAAATTCGAATTTATATACTCTAGATCCAAAAAATTTTTCATAAATTTGTGTATGATTATAAAACATAGTAGTTGTTAGCAAGGTATTTTTTAGTATTCGTACCTTAGGAGGAATACTAATAATAAATAGAAATTATAATAAATCAAAATAAATATGATGGAAGTGAAAGAGAAGAGTAGA
12 C010 C010 AAATAAATATGATGGAAGTGAAAGAGAAGAGTAGATAAAATTTTATATCACGTTATATACGAGTCTTTCACATCCTCTTTTTTATATTTCATTAATTTCATTTCGTTTTAGTAAGACTTCATTCCGTAAAAATCCCAGCCTTCTTTGAAATATCATGAGCTGTTCTTGTTGGTTGAGCTCCTTTTTTAAGAAAATCGAGAATAGCAGAAAGGTTTAAAAAAGTTTGATTAGTTATGGGATCATAAAAACCCACCTTACTAAGATCTCTTCCTTCTCTTCGGTATCGAACATCAATTGCAAGGATTCGATAAACGGCTCGTTGGGATAGATGTATATGAATAATACCCCCCCTAGAAACGTATAAGAGGTTTTGGCCTCGTACGGCTCGAGAA
13 C011 C011 TTTGGCCTCGTACGGCTCGAGAAAAAAAATTCAAATAGTAAATTCAAATATTAAATAGAGAAATAAAAACATTAAATCAATTAGCCAGTATTAAAACCCTAAATATTTTTTCCATAAAAAGCATTCATAACATTCGTACTCTCGTAACTCAAGTTAAACAACTCTCAAATATCTCACCGGAGAATCCTTAAGTACTTTTTTTATTGAGTAGTCTCTAGCCCTTTTTTTGTTTGTCTCATTGCAAATTTTAGAATCAATTTTGATTCTTCAGTTTGATCTAGTTTTTCAAACAATTGAAAACAGGATTTCCTTTTTTCAAGATTCTTTATCCTTACTTTGAATCTTTAGGTTTAGACATGACTTCGGTGATATTGAATCGTTTTATTAAAAAAGGGCAGCAACAAGCCCCTTATTTTGTTTATGATTTCTGTTCTTTCTATACAAA
14 C012 C012 AAAGGGCAGCAACAAGCCCCTTATTTTGTTTATGATTTCTGTTCTTTCTATACAAAGAATCATACAAACGCTTGATTCACGCATGATAGACTTTTGATTCAAAGAATTTTACAATTTTAAGAAAATTTCCTTTTCCATTGTAAAATTGCTTGAAAGGACTTTTTTCAATATAAAAAGACTTACGAAGTTGTTCCAACTTATTAATTCGCACTAACCCTAAATCCTTACTCCTGCGAAAGGACTAAAAACTTTCTATTCTCCTCGAGCTCCATCCTGTACTCTTTTTTATATTACAAAAAAGTGTAGGACTCTTGTAAAATAGAATACAAAATGTCGAGCCAAGAGCACCTATATTCCTAATATAAAAATAAAAGTGGCGGATGAAAAAATCCACAGCAGATAATGTCCTTCAATTCAAGTCGTACGTTGCTTTCTACCACATCG
15 C013 C013 CCACAGCAGATAATGTCCTTCAATTCAAGTCGTACGTTGCTTTCTACCACATCGTTTTAAACGAAGTTTTACCATAACATTCCTCTAGTTTGTGTAATTGATTCAATGATGGAATCATGAATAGTCATAGTTCAGTCAGTATATAATAATCTATACCTTTTCTTTCTCTATGAATGGAATAGTTTATTTACGCGTAAAGGTTCGGTCAGAATGAAAATGAATTCCATATTAGTTTGAATAGAAATCTATATTTATATATAAATAAATAAATATAGATTTTTTTATTAAAACTCTTAGAATCTGCGGTTCTACCTTACTTACCCGCATCACACAAATTAAAAAAGCAAATAGATTTTTTTTGAATTCGGTTGAAATAATGAAAAATTAAGTTTATTCTTCTTTTCATTTCAATATTTTATTCTTAAAAAATTTGGATTTTTAAACAGAAAGAGAAAGATGGTGTACAAAGGCAATAGAAGATTG
16 C014 C014 TTTAAACAGAAAGAGAAAGATGGTGTACAAAGGCAATAGAAGATTGATTCTGTAATGACTGTACTCTGGGACGGAAGGATTCGAACCTCCGAATAGCGGGACCAAAACCCGTTGCCTTACCGCTTGGCTACGCCCCATTTCGCTTTTTATTCAAGACTACTAAAAGAGTAATATTCCTATTGGTTGTTCGTCAATTCAAAATGAAATATAGATTACATTGGTGCTAAAGTTTTAACACGTGTAGATAGCAAATAAAACTTACTTTATTGATCATTACATAGAATTCAATTAAGATATTGTATGAAAATATTATTTCTTTCATTCTCATAAGAGAATAAAAGGATTTTTGATTGAGTAAGTTCAACAAAGTCTTTTTAGACTATCTTTCTTTATTTTTTCCTTATATAAAAAATATATTAAAAACTCAATCAAAATTAAATTATCCACAAGAACACCAATTT
17 C015 C015 AAATTAAATTATCCACAAGAACACCAATTTTTGTTATGCTTAATATATTTAATTTGATCTGTATTTTTTTTAATTCTACCCTTTTTTCAAGCACTTTTTTAGTCGCCAAATTGCCAGAGGCCTACGCCTTTTTGAATCCAATCGTAGATGTTATGCCCGTAATACCTCTTTTCTTTCTTCTCTTAGCCTTTGTTTGGCAAGCCGCTGTAAGTTTTCGATAAAATTCTTAATACTGTCTTAAACAAATTCACGATTTTGATTTTTCCAACAATTCAAAAGATCCAAAAAATCTTGACGTATGAACGAACTCTCAATTCAAACATTTAATTTTTTTGGTAGCCATACTAAATCTGGATCATTTCTATTTCCTAAATTTTATCCTCTTTTCCCTAAATGAAAGAACCTAATTAGA
18 C016 C016 GGTAGCCATACTAAATCTGGATCATTTCTATTTCCTAAATTTTATCCTCTTTTCCCTAAATGAAAGAACCTAATTAGATTCAAGTTCACCAAAAAAATATCTAGATGTTGGTATGCAAATCTGTTTGAATATGAAAGATTCGACTATTATCTTAATTACAAATAACTTTCTGAAACCTTTTTTTTTATTGGTATCAAAATTAGATATTTGATATAAAAATAGAGAATCTATTCTCTTTTTTTTTAGTAAGATCTTGGAGATTGTGTAATGCTTACTCTCAAACTTTTTGTATACACTGTAGTTATATTCTTTGTTTCTCTCTTCATATTTGGATTCCTATCTAATGATCCAGGACGTAATCCGGGACGTGAAGAATAAAAAAGAAAGTTTTTTTATTGCTTTATTTAATTCGTGGAAATGCTCGAATTTTATTAGGATTTTATCTATTACACACCATCAAAAGGAGAAGGGGAAAGAGAGGGATTCGAACCC
19 C017 C017 TCGAACCCTCGGTACGATTAACTCGTACAATGGATTAGCAATCCAACGCTTTAGTCCACTCAGCCATCTCTCCTAATCGAAAAGGGATATTTAATTAGGTTCCATAAAAAAAAAAAAAGGCTTGAAAAAGAACCTTCTCCACTTTATTCTTAAAAAGCTTTCTTTTTTTGTTATAGATATTCTTTATCTTTATATTATATATATATATATTTTTTTTCATTTTCTATATTTTTTTCTATATTTTATTATATTATTATATATATATATATTCTTTTTGATTATTTGATTATATAAATATATATATCCTATATTTAAATATATAATATATATATAATATATATCCTATATATAAATTATATAAATCCTCTATTATATATATAATATATATATAATATATATTATATAATATATATATTACTATTATATAACTGTTTTTATAGAACTTTCTCAGCAATTCTAGTTACATTAAAAATTTAGCTAAAGATTAGATAAAAAAGGCGCGAACTCAAA
20 C018 C018 GAACTTTCTCAGCAATTCTAGTTACATTAAAAATTTAGCTAAAGATTAGATAAAAAAGGCGCGAACTCAAAAAAGAAATAAATAAAACCATAATCATAGAAATAGAGAATCCTTTTTTTATTTTGTCTCGTCAAAACAAAAACACAAGTAAAAGATCTTTTTTATTTTAATAGCCTGGCCTGGTCAGTCCCCAGCCGGGCCTTTTTTTGTTAAAATTAAAAAGACTCATCCGATGGATTTTTAGATAAAAAAAGATTTGAAATAAAAAAAAAAGTGGAATTGAATTCGCTTTTACTAATTTTCTTAAGTCAACTCTAGTTTTTTCTAAATTTTTTCAGATTTTTTTATTACACCCCCGATTACTTTGTTCGACAAAAGGTTAATTTATATGCAATAATTGCATTGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGATTCGTTCCTTTAATCCCTTTAATAGTTAAAGGGTCTCTCGGTTTGATT

Total number of rows: 25228

Table truncated, full table size 6738 Kbytes.




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