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Platform GPL5536 Query DataSets for GPL5536
Status Public on Nov 18, 2007
Title 2005-09-28_Crawford_HG17_Set04
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Nimblegen
Manufacture protocol Oligonucleotides spaced approximately every 100 base pairs across the entire non-repetitive human genome were synthesized in situ on a 38-array set.
 
 
Contributor(s) Davis S, Crawford GE
Submission date Jul 13, 2007
Last update date Nov 18, 2007
Contact name Sean Davis
E-mail(s) sdavis2@mail.nih.gov
Phone 301-435-2652
Organization name National Cancer Institute
Lab Genetics Branch
Street address 37 Convent Drive, Room 6138
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (1) GSM210493
Series (1)
GSE8486 Whole genome DNAse hypersensitivity in human CD4+ T-cells

Data table header descriptions
ID Feature Match index
PROBE_DESIGN_ID PROBE_DESIGN_ID
SEQUENCE Actual sequence of probe
PROBE_ID Probe ID
X Physical X position on array
Y Physical Y position on array
chromosome Chromosome Name [build 35]
RANGE_START Start location on chromosome [build 35 coordinates]
RANGE_END End location on chromosome [build 35 coordinates]
RANGE_STRAND Strand of probe
RANGE_GB RefSeq genome accession for chromosome (NCBI35 build)
SPOT_ID spot identifier

Data table
ID PROBE_DESIGN_ID SEQUENCE PROBE_ID X Y chromosome RANGE_START RANGE_END RANGE_STRAND RANGE_GB SPOT_ID
52705759 2608_0580_0492 GTGACAAGAATAAGTAAATACTGTATAGTTAGGAAACAAATTAGGTATAT chr2P35630567 580 492 chr2 35630567 35630616 + NC_000002.9
52542112 2608_0582_0492 ACAGCGAGGTCAGGTGTAGTTGAGACACTGGAAATGTTGCAGTATTTGTG chr2P21744996 582 492 chr2 21744996 21745045 + NC_000002.9
52733461 2608_0584_0492 CATTAAAACAAAGCAGAAAACCAAACCAAACTTGCCTAACTGCAAAATGC chr2P7611482 584 492 chr2 7611482 7611531 + NC_000002.9
52598311 2608_0586_0492 CTGAAGGGATTTGGGGGGAATAAGAGGAGGAAGAAAATAATCAGGATGAA chr2P25270490 586 492 chr2 25270490 25270539 + NC_000002.9
52813860 2608_0588_0492 CACGCTGTGATTGTTCATCAGACTGCAATTGTTCAGCTCCTTATGTAAAT chr2P8597553 588 492 chr2 8597553 8597602 + NC_000002.9
52588029 2608_0590_0492 AACTTTAAAGTTAATATAAACTTTACATTCTACTTCATGTGAATGTAATA chr2P35548109 590 492 chr2 35548109 35548158 + NC_000002.9
52682840 2608_0592_0492 CAGGCTTGCTGTCACCCTCATCTCAGCTGAGAATTGCTACAGACAGGTAT chr2P34688736 592 492 chr2 34688736 34688785 + NC_000002.9
52500295 2608_0594_0492 GAGGAGATACCTATGTCCTATGTTTGCCTCAGTCTTTTGGAAGTCATATA chr2P43885772 594 492 chr2 43885772 43885821 + NC_000002.9
52834759 2608_0596_0492 TGTCTGTCATTGCTTTTGTTTGGCTACACAATGGATAGATTGAAATGAAT chr2P58787393 596 492 chr2 58787393 58787442 + NC_000002.9
52643097 2608_0598_0492 ATACATGAAAAGGTGGATGAACAATCAGAAGTAATCATTGCGGGCTATGT chr2P42316808 598 492 chr2 42316808 42316857 + NC_000002.9
52504351 2608_0600_0492 ATTAGCTTGCTTCAAATTTGCATACACTTCATTTCCTGTCTCTTTAACGA chr2P58784233 600 492 chr2 58784233 58784282 + NC_000002.9
52733600 2608_0602_0492 AAAACTTACATTTCTATCCTATGTTATTAATCTGAAAAAACCAGTCACAA chr2P44122505 602 492 chr2 44122505 44122554 + NC_000002.9
52573549 2608_0604_0492 ATTGACCACATATGGTCTAGCATGGTTAAAAACATCTGGATTAAGCATTT chr2P51968289 604 492 chr2 51968289 51968338 + NC_000002.9
52810658 2608_0606_0492 TTTGGAGTCAAGAACACAACATGAATAACTAATTCAAAGGTATCTGGGTG chr2P44064188 606 492 chr2 44064188 44064237 + NC_000002.9
52745869 2608_0608_0492 AAGGTTAGGTACTAGTCACTGTAACTCCTTTTGTTATGAATGTACTTATG chr2P11387576 608 492 chr2 11387576 11387625 + NC_000002.9
52611376 2608_0610_0492 TTATATGCTCAGGACTAAAATAGTTGATGCAGGAATATTTTTAAAACAAT chr2P57395449 610 492 chr2 57395449 57395498 + NC_000002.9
52642192 2608_0612_0492 CTGAACAGCCCACAAAAGGCTTGGGAAAGTAAAAACAATGCCCTGTATTT chr2P60588354 612 492 chr2 60588354 60588403 + NC_000002.9
52683734 2608_0614_0492 GAGAGACAGAGAGAGAGAGAGAATCACCTTTTAAACTCATCCAAGAGCCA chr2P60653678 614 492 chr2 60653678 60653727 + NC_000002.9
52624282 2608_0616_0492 TTTGGATCTTGGTAAATACAAAAGTTCTTTGGAGGACTAACACACCAAAC chr2P32987341 616 492 chr2 32987341 32987390 + NC_000002.9
52797411 2608_0618_0492 AGGTTTGTGTAAACAAAGGTCCTGCAAGGCACAGCTGTTTTACATTCTGA chr2P54642999 618 492 chr2 54642999 54643048 + NC_000002.9

Total number of rows: 391015

Table truncated, full table size 51170 Kbytes.




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Supplementary data files not provided
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