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Platform GPL5543 Query DataSets for GPL5543
Status Public on Nov 18, 2007
Title 2005-09-28_Crawford_HG17_Set11
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Nimblegen
Manufacture protocol Oligonucleotides spaced approximately every 100 base pairs across the entire non-repetitive human genome were synthesized in situ on a 38-array set.
 
 
Contributor(s) Davis S, Crawford GE
Submission date Jul 13, 2007
Last update date Nov 18, 2007
Contact name Sean Davis
E-mail(s) sdavis2@mail.nih.gov
Phone 301-435-2652
Organization name National Cancer Institute
Lab Genetics Branch
Street address 37 Convent Drive, Room 6138
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (1) GSM210500
Series (1)
GSE8486 Whole genome DNAse hypersensitivity in human CD4+ T-cells

Data table header descriptions
ID Feature Match index
PROBE_DESIGN_ID PROBE_DESIGN_ID
SEQUENCE Actual sequence of probe
PROBE_ID Probe ID
X Physical X position on array
Y Physical Y position on array
chromosome Chromosome Name [build 35]
RANGE_START Start location on chromosome [build 35 coordinates]
RANGE_END End location on chromosome [build 35 coordinates]
RANGE_STRAND Strand of probe
RANGE_GB RefSeq genome accession for chromosome (NCBI35 build)
SPOT_ID spot identifier

Data table
ID PROBE_DESIGN_ID SEQUENCE PROBE_ID X Y chromosome RANGE_START RANGE_END RANGE_STRAND RANGE_GB SPOT_ID
52737264 2615_0001_0001 TTAACTCTTTTAGATATGCTTTATCTTATTAATGCTTTACTGAAAGCATT chr4P129271604 1 1 chr4 129271604 129271653 + NC_000004.9
51312160 2615_0004_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 4 1 NA 0 0 CPK6
51312170 2615_0006_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 6 1 NA 0 0 CPK6
51312171 2615_0008_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 8 1 NA 0 0 CPK6
51312172 2615_0010_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 10 1 NA 0 0 CPK6
51312173 2615_0012_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 12 1 NA 0 0 CPK6
51312174 2615_0014_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 14 1 NA 0 0 CPK6
51312175 2615_0016_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 16 1 NA 0 0 CPK6
51312176 2615_0018_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 18 1 NA 0 0 CPK6
51312177 2615_0020_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 20 1 NA 0 0 CPK6
51312178 2615_0022_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 22 1 NA 0 0 CPK6
52737878 2615_0025_0001 CTGATCATCAAGTTCCTTGGCTTCTATGGGTGTACAGTTTGAATTTTTGT chr4P124296809 25 1 chr4 124296809 124296858 + NC_000004.9
52685244 2615_0027_0001 TTATGAGTATGTAATTGTATTATTTTCCTACCTTTAGCCACATCTCCACT chr4P87556075 27 1 chr4 87556075 87556124 + NC_000004.9
52522493 2615_0029_0001 TTCTGTTTTTAAAACATTGCTTGGATTAAATCAGCAAATTGTACTGTTAT chr4P148367259 29 1 chr4 148367259 148367308 + NC_000004.9
52628200 2615_0031_0001 AAATAAATTTGAGAATCTCTTTTCTTGCAGTGGATTCTGTGAATTGAATT chr4P87538765 31 1 chr4 87538765 87538814 + NC_000004.9
52802058 2615_0033_0001 TTAGTTCTGAAACACCAAGTAATTGGCGAACAAAAGCCATCTTTGTTTGA chr4P109421811 33 1 chr4 109421811 109421860 + NC_000004.9
52631785 2615_0035_0001 AAATATTTGAAGAGTGAAGACTTATGCTTTACAGTGAATAATGTCCCCAA chr4P111798323 35 1 chr4 111798323 111798372 + NC_000004.9
52793265 2615_0037_0001 TGGAGTAAGAAATAAGGGTACAGAGTTATTTACTTTAAAATGTCTTGACA chr4P158059392 37 1 chr4 158059392 158059441 + NC_000004.9
52755740 2615_0039_0001 ACTAGAAAAAACTTAAAAAACCAGAACAACTTCCCAAAGTATATAGATTA chr4P138212486 39 1 chr4 138212486 138212535 + NC_000004.9
52515382 2615_0041_0001 GCCATTCTATGATTCTTTTACGGAACATACACACACATACCCACATCCCC chr4P117891716 41 1 chr4 117891716 117891765 + NC_000004.9

Total number of rows: 391015

Table truncated, full table size 52275 Kbytes.




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Supplementary data files not provided
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