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Platform GPL5847 Query DataSets for GPL5847
Status Public on Dec 05, 2007
Title Human microRNA 1K array version 1.0
Technology type in situ oligonucleotide
Distribution custom-commercial
Organisms Caenorhabditis elegans; Homo sapiens; Human betaherpesvirus 5; human gammaherpesvirus 4; Murid gammaherpesvirus 4; Human gammaherpesvirus 8
Manufacturer Combimatrix
Manufacture protocol Combimatrix CustomArray™ uses a specially modified “CMOS” semiconductor to direct the molecular assembly of a specific sequence of DNA bases in response to a digital command. Each feature on the array (a microelectrode) is digitally addressed to selectively generate acid, by means of an electrochemical reaction which, in-turn, controls the detritylation reaction during phosphoramidite synthesis. A software program is used to control the microelectrodes, and thus, the detritylation pattern applied on the chip during synthesis.
 
 
Contributor(s) Mendell JT, Valle D, Witmer D
Submission date Sep 12, 2007
Last update date Dec 05, 2007
Contact name Tsung-Cheng Chang
Organization name Johns Hopkins University School of Medicine
Street address 733 N. Broadway
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Samples (2) GSM230044, GSM230045
Series (2)
GSE9070 Identification of Myc-regulated microRNAs in human P493 cells
GSE9129 Identification of Myc-regulated microRNAs: human and mouse

Data table header descriptions
ID
SEQUENCE Nucleotide sequence of oligonucleotide probe
PROBE_TYPE Perfect match or mismatch of mature microRNA or pre-microRNA. Some controls were also included.
ORGANISM Organism source of feature.
ORF
SPOT_ID

Data table
ID SEQUENCE PROBE_TYPE ORGANISM ORF SPOT_ID
QC-oligoB-AS-3 GAGTTGCTGTTACATCAGCGAATGTGCATGGAACACACTT control control
QC-3prime TGACTGACTGGACTGTGGGTGTGCGATACGTGTCC control control
QC-5prime TGGGTGTGCGATACGTGTCCGACTGACTGACTGAC control control
QC-LLD-1 AGATTTCTTCGGTTTCCCGTGGTTGGCGTCTGA control control
QC-LLD-2 GGAGTATGTTCGGCTGCGCGAGAGCTATGATGCCG control control
QC-LLD-3 GTGGCGATGTTAACCTCGGCTTATGGCGTCACCGG control control
QC-LLD-4 CGAACATCCCAGGGTAACACGCA control control
NC-SP-phage-03-3 CACCGTAATTACTGTGAGCCATCATGACGCCGATG control control
NC-SP-phage-03-7 GACGGTGATCGCATCGGTGCTGTTAACAAGTTCAT control control
NC-SP-phage-03-8 AGTGGCTGAAACAGTTGTTGATTGAGTCTCTTTGG control control
NC-SP-phage-05-2 CCATGATTACGCCAGTTGTACGGACACGAACTCAT control control
NC-SP-phage-05-1 GGAGACGGGCAATCAGTTCATCTTTCGTCATGGAC control control
NC-SP-phage-05-16 CCTGTCCGGCATAGCTGATATTTTCAGGGTCATCA control control
NC-SP-phage-06-1 GACTCTCCGGATTAACTGGCGGTGACGGTAATTTC control control
NC-SP-phage-06-8 TCATACATACCAGACAGCCGGTACACCACGTTTTC control control
NC-SP-phage-06-14 GTCACACCGTTATGTTCAAATGATTCGGTTTTCAG control control
NC-SP-phage-08-9 GTGACCATACCGTACAGGTTAGAAACCGTCAGCGT control control
NC-SP-phage-08-10 GGATCGGCGTAACTGTTTCCGTTGACGAAGTTCAC control control
NC-SP-phage-08-13 GGACAGAAAGCGTCACGCTGTACGTTTTCAGGTTG control control
NC-SP-phage-09-4 CGACCAAATCGTTGTAAATCCCCGTAAAGGCAGAT control control

Total number of rows: 1161

Table truncated, full table size 105 Kbytes.




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Supplementary data files not provided
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