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Platform GPL6010 Query DataSets for GPL6010
Status Public on Oct 24, 2007
Title CapitalBio Saccharomyces cerevisiae 23K oligo array
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Saccharomyces cerevisiae
Manufacturer CapitalBio Corporation
Manufacture protocol A Yeast Genome Oligo Set consisting of 5’ amino acid-modified 70-mer probes was purchased from Operon. Then Oligonucleotides were dissolved in EasyArrayTM spotting solution (CapitalBio Corp) at 40 uM concentration, and printed on PolymerSlide (75×25 mm), in which the surface was covered by a thin layer of aldehyde group modified three-dimensional polymer chain (CapitalBio Corp.). A set of microarray containing a total of 23184spots, including 6400 clones in the form of PCR products and controls: Hex was used as mobilized positive control; DMSO was used as spot solution and negative control; Five housekeeping genes of yeast genome, ACT1, RPL32, SSA4, TUB4, UB14 were used as positive controls, and Eight sequences derived from intergenic regions of the yeast genome were used as external controls. These sequences were PCR amplified and cloned into plasmid pSP64Poly (A) (Promega) to produce poly (A)-RNA after in vitro transcription. All of the PCR products and controls were spotted in triplicate on slide. On the slide, there are 48 blocks and every block has 21 columns and 22 rows.
 
 
Contributor(s) Deng X
Submission date Oct 15, 2007
Last update date Oct 24, 2007
Contact name Xuming Deng
E-mail(s) xumingdeng@yahoo.com.cn
Organization name College of Animal Science and Veterinary Medicine, Jilin University
Street address Xi'an Street 5333#
City Changchun
ZIP/Postal code 130062
Country China
 
Samples (12) GSM239255, GSM239256, GSM239257, GSM247647, GSM247648, GSM247649 
Series (4)
GSE9409 Global transcriptional profiling of Saccharomyces cerevisiae treated with p-anisaldehyde
GSE9817 Global transcriptional profiling of Saccharomyces cerevisiae treated with dictamnine
GSE11856 Global transcriptional profiling of Saccharomyces cerevisiae treated with allicin

Data table header descriptions
ID
gene gene
SGD_ID SGD identifier
SPOT_ID blanks, controls, etc.
ORF Locus tag

Data table
ID gene SGD_ID SPOT_ID ORF
1 ACT1 --housekeeping gene
2 ACT1 --housekeeping gene
3 ACT1 --housekeeping gene
4 RPL32 --housekeeping gene
5 RPL32 --housekeeping gene
6 RPL32 --housekeeping gene
7 SSA4 --housekeeping gene
8 SSA4 --housekeeping gene
9 SSA4 --housekeeping gene
10 TUB4 --housekeeping gene
11 TUB4 --housekeeping gene
12 TUB4 --housekeeping gene
13 UB14 --housekeeping gene
14 UB14 --housekeeping gene
15 UB14 --housekeeping gene
16 Hex --immobilized positive control
17 Hex --immobilized positive control
18 Hex --immobilized positive control
19 DMSO --spot solution,negative control
20 DMSO --spot solution,negative control

Total number of rows: 23184

Table truncated, full table size 1696 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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