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Platform GPL6257 Query DataSets for GPL6257
Status Public on Jan 07, 2008
Title University of Amsterdam Bacillus subtilis 168 9.2K Array Version 2
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Bacillus subtilis
Manufacturer Microarray department (MAD) Amsterdam, www.microarray.nl
Manufacture protocol The B. subtilis oligonucleotide libraries (Cat # BACLIB384) were obtained from Sigma-Compugen Incorporated. Technical support was supplied by LabOnWeb company. The libraries represent in total 4128 oligos, which represent 4106 B subtilus genes, 10 controls from E.coli and the Brome mosaic virus and 12 random oligos LEADS™ clusters plus 231 controls. The oligonucelotide library was printed with a Lucidea Spotter (Amersham Pharmacia Biosciences, Piscataway, NJ, USA) on commercial UltraGAPS slides (amino-silane-coated slides, Corning 40017) and processed according to the manufacturer’s instructions.
Support glass
Coating aminosilane
 
Description This is a condensed platform of the full 9.2K array. The full layout is linked as a supplementary file.
 
Contributor(s) Ter Beek A, Keijser BJ, Boorsma A, Zakrzewska A, Orij R, Smits GJ, Brul S
Submission date Dec 07, 2007
Last update date Jan 07, 2008
Contact name Anna Magdalena Zakrzewska
E-mail(s) ania.zakrzewska@gmail.com
Phone 020-6923990
Fax -
URL http://-
Organization name University of Leiden
Department IBL
Lab A. Meijer
Street address Wassenaarseweg 64
City Leiden
ZIP/Postal code 2333 AL
Country Netherlands
 
Samples (18) GSM247935, GSM247936, GSM247937, GSM247938, GSM247939, GSM247940 
Series (2)
GSE9823 Time-series of transcriptome analysis of Bacillus subtilis response to 3 mM potassium sorbate
GSE55051 Time-series of transcriptome analysis of Bacillus subtilis response to 25 mM potassium acetate and 0.85 µM CCCP

Data table header descriptions
ID
ORF locus_tag accession number

Data table
ID ORF
aadK BSU26790
aapA BSU27090
abfA BSU28720
abh BSU14480
abnA BSU28810
abrB BSU00370
accA BSU29200
accB BSU24350
accC BSU24340
accD BSU29210
acdA BSU37170
ackA BSU29470
acoA BSU08060
acoB BSU08070
acoC BSU08080
acoL BSU08090
acoR BSU08100
acpA BSU15920
acpK BSU17130
acpS BSU04620

Total number of rows: 4100

Table truncated, full table size 56 Kbytes.






Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL6257.txt.gz 289.4 Kb (ftp)(http) TXT
GPL6257_sequences.txt.gz 411.2 Kb (ftp)(http) TXT

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