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| Status |
Public on Apr 11, 2014 |
| Title |
Time-series of transcriptome analysis of Bacillus subtilis response to 25 mM potassium acetate and 0.85 µM CCCP |
| Organism |
Bacillus subtilis |
| Experiment type |
Expression profiling by array
|
| Summary |
The advent of ‘omics’ techniques bear significant potential for the assessment of the microbiological stability of foods. This requires the integration of molecular data with their implication for cellular physiology. Here we performed a comparative physiological and transcriptional analysis of Bacillus subtilis stressed with three different weak organic acids: the commonly used food preservatives sorbic- and acetic- acid, plus the well-known uncoupler carbonyl cyanide-m-chlorophenyl hydrazone (CCCP). The concentration of each compound needed to cause a similar reduction of the growth rate negatively correlated with their membrane solubility, and positively with the concentration of undissociated acid. Intracellular acidification was demonstrated by expressing a pH-sensitive GFP derivative. The largest drop in intracellular pH was observed in CCCP-stressed cells and was accompanied by the transcriptional induction of the general stress response (GSR) and SigM regulon, responses known to be induced by acidification. The GSR was induced by acetate, but not by sorbate in mildly-stressed cells. Microarray analysis further revealed that all three acids activate transcriptional programs normally seen upon nutrient limitation and cause diverse responses indicative of an adaptation of the cell envelope. Based on the responses observed and the utilized pH measurements, the inhibitory effect of sorbic acid seems to be more focused on the cell membrane than that of acetic acid or CCCP.
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| Overall design |
Time-series of B. subtilis response to 25 mM potassium acetate and 0.85 µM CCCP during controlled growth in batch-fermentors in defined minimal medium (pH 6.4). Samples for microarrays were taken from both the treated and control cultures at 0, 10, 20, 30, 40, and 50 min after addition of acetate and CCCP. Two biologically independent experiments were performed.
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| Contributor(s) |
Ter Beek A, Wijman JG, Zakrzewska A, Orij R, Smits GJ, Brul S |
| Citation(s) |
25481064 |
| |
| Submission date |
Feb 14, 2014 |
| Last update date |
Dec 09, 2014 |
| Contact name |
Alexander Ter Beek |
| E-mail(s) |
alexander.terbeek@gmail.com
|
| Organization name |
University of Amsterdam - Swammerdam Institute for Life Sciences
|
| Department |
Molecular Biology & Microbial Food Safety
|
| Lab |
prof. Stanley Brul
|
| Street address |
Science Park 904
|
| City |
Amsterdam |
| ZIP/Postal code |
1098XH |
| Country |
Netherlands |
| |
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| Platforms (1) |
| GPL6257 |
University of Amsterdam Bacillus subtilis 168 9.2K Array Version 2 |
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| Samples (12)
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| GSM1328826 |
Bsubtilis_KAcetate_t00min_combined_2_replicates |
| GSM1328827 |
Bsubtilis_KAcetate_t10min_combined_2_replicates |
| GSM1328828 |
Bsubtilis_KAcetate_t20min_combined_2_replicates |
| GSM1328829 |
Bsubtilis_KAcetate_t30min_combined_2_replicates |
| GSM1328830 |
Bsubtilis_KAcetate_t40min_combined_2_replicates |
| GSM1328831 |
Bsubtilis_KAcetate_t50min_combined_2_replicates |
| GSM1328832 |
Bsubtilis_CCCP_t00min_combined_2_replicates |
| GSM1328833 |
Bsubtilis_CCCP_t10min_combined_2_replicates |
| GSM1328834 |
Bsubtilis_CCCP_t20min_combined_2_replicates |
| GSM1328835 |
Bsubtilis_CCCP_t30min_combined_2_replicates |
| GSM1328836 |
Bsubtilis_CCCP_t40min_combined_2_replicates |
| GSM1328837 |
Bsubtilis_CCCP_t50min_combined_2_replicates |
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| Relations |
| BioProject |
PRJNA238333 |
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