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Platform GPL6346 Query DataSets for GPL6346
Status Public on Jan 09, 2008
Title University of Texas UTHSC-H Candida albicans 6K v1.0
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Candida albicans
Manufacturer Microarrays, Inc., Nashville, TN
Manufacture protocol The C. albicans Genome Oligo Set consisting of 70mer probes representing 6266 C. albicans genes was obtained from Qiagen (Valencia, CA), and printed on glass slides by Microarrays, Inc (Nashville, TN).
 
 
Contributor(s) Agarwal AK, Xu T, Jacob MR, Feng Q, Lorenz MC, Walker LA, Clark AM
Citation(s) 18156292
Submission date Jan 06, 2008
Last update date Jan 09, 2008
Contact name Ameeta Agarwal
E-mail(s) aagarwal@olemiss.edu
Phone 662-915-1218
Organization name University of Mississippi
Department National Center for Natural Products Research
Street address NCNPR, Room 2049
City University
State/province MS
ZIP/Postal code 38677
Country USA
 
Samples (3) GSM254789, GSM254790, GSM254791
Series (2)
GSE10075 Gene expression response to the antifungal compound sampangine in C. albicans
GSE10104 Gene expression response to the antifungal compound sampangine

Data table header descriptions
ID
ORF ORF designator identified in NCBI's Entrez Genomes
Oligo_ID Oligo ID
Internal_ID Orf 19 number for C. albicans
Gene Symbol Gene symbol
Description Gene description
SPOT_ID
SEQUENCE

Data table
ID ORF Oligo_ID Internal_ID Gene Symbol Description SPOT_ID SEQUENCE
1 0 0 Empty
2 CaO19.3270 CA00330_01 orf19.3270 CaGSL23.3f 1,3-beta-D-glucan synthase subunit, 3-prime end GATACGTCCTAGAATATTATCCAAACGTCAAAAACGAAGAAGAAGATTTCAGGCAAACTTGTACTTGCTC
3 CaO19.5024 CA10134_01 orf19.5024 CaGND1 6-phosphogluconate dehydrogenase AGATGAATGGATTCACATTAACTGGACTGGTAGAGGTGGTGATGTTTCTTCAACTACTTACGATGCTTAG
4 CaO19.6229 CA10133_01 orf19.6229 CaCTA1 catalase A, peroxisomal(by homology) AAGGTGAATGGTTTTACGTTCAAGTTCATTTCATCAGTGATCAAGGTATTAAGACTTTGACCAACGAAGA
5 CaO19.3256 CA10114_01 orf19.3256 CaSLN1 Two-component signal transducer histidine kinase component TCCAACACCTACAACTACTACAACTACTACAACAACAACAGACCATACTACTGTATTGGATGATATATCA
6 CaO19.690 CA10073_01 orf19.690 CaPLB2 phospholipase B CGGAACACAAATTTAACTAGTAAGCCAACGTTTTTTGGATGTGATGCCCAGAACTTGACATCATTAACTG
7 CA10140_01 0 isopropyl malate dehydrogenase CA10140_01 AAGAAAGTGAAGACCACCAAACAGCTTGGTATAGACCAAAGTATACTGTTGACGAAGTTACTCGTATCAC
8 CaO19.2896 CA10285_01 orf19.2896 CaSOU1 Sorbitol utilization protein Sou1p [Candida albicans] ATTTAGCCAAATCATTGAGTGTGGAATGGGCTAGTTTTGGTGCTAGAGTAAATTCAATTTCTCCAGGGTA
9 CaO19.5750 CA10044_01 orf19.5750 CaSHM2 Serine hydroxymethyltransferase precursor, mitochondrial (by homology) TCAATATTGCTTTGAATAAGAATTCCATTCCTGGAGATAAATCCGCTTTAGTTCCAGGTGGGGTTAGAAT
10 CaO19.6081 CA10124_01 orf19.6081 CaPHR2 pH-regulated protein 2 CAACTTGTTGACTAAGATTGCCACTATCGGTATTTCTATCGTTGTTGGTTTCGGTTTAATTACCATGTAA
11 CaO19.896 CA10106_01 orf19.896 CaHK1 Histidine kinase CGACAAAAAGAGGTGTCTAGAAGAGGGAATGTTTGATTTTATAACCAAACCCATTTTACCAGATGAACTT
12 CaO19.2571 CA10056_01 orf19.2571 CaSEC4 GTP-binding protein TGGTGCCAGTGGTGCTGGTGGTATAGATGTTTCTCAGAATAATTCTGGAGCAAAGAATAACTGTTGCTAG
13 CaO19.6928 CA10090_01 orf19.6928 CaSAP9 aspartyl proteinase 9 (by homology) CACTACACAATTACGTTACACCTACCAGAACTTGCCTCTTAAATTGAAAGCAGATGGAATTATTGCAAAG
14 CaO19.689 CA10089_01 orf19.689 CaPLB1 phospholipase B AAACCGTCCATTCACTTACTGGTCTAATACATCAACTTTCAAATTAACATACGACGATAACGAAAGGCAA
15 CA00144_01 CaSOD1.3 Cu,Zn-superoxide dismutase, 3-prime end CA00144_01 ATTGTTGTTCATGCTGGTACTGATGATTATGGTAAAGGTGGTTTTGAAGATTCTAAAACTACTGGTCATG
16 CaO19.6451 CA10283_01 orf19.6451 CaPOL0 pol polyprotein, reverse transcripase GACTAAGTGTCTAAGTCGTGCTAAATTCAAAGCATTCGTTGAGGGTATGATAAAACGGTTAGACCTAGAA
17 CaO19.3731 CA00336_01 orf19.3731 CaERG25 C-4 sterol methyl oxidase ATTTCATTTTGGATACCGAAGCTGGTCCAAAAGCTAAAAAGGGTAGAGAAGACAAAGTCAAACAAAATGT
18 CaO19.5230 CA00337_01 orf19.5230 CaMRPS9 ribosomal protein S9 small subunit precursor AGTGGTGTTTAACCCCTTGTTGAAACCAAGATTATCTAAGGCTGGATTAATGAAGAGTGATACAAGAATT
19 CaO19.9369 CA10069_01 orf19.9369 CaCDC43 geranylgeranyltransferase I GAACCAGATCTTCGAGTTTGTTATATGGCATTATTGATTCGTCATTTAATGAAATATGATGACCATAATA
20 CA11126_01 0 Candida albicans RAD6 (RAD6) gene, complete cds. CA11126_01 AGACCCACCAAGTGGAGTATCAGCATCTCCATTACCAGATAATGTCATGAAATGGAATGCAGTAATTATA

Total number of rows: 14112

Table truncated, full table size 1915 Kbytes.




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