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Platform GPL6448 Query DataSets for GPL6448
Status Public on Feb 01, 2008
Title [Mm35b_P05R] Affymetrix Mouse Tiling 2.0R Set, Array 5
Technology type in situ oligonucleotide
Distribution commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
Catalog number 900852
Description Tiling array submissions are typically submitted to GEO using the GEOarchive method described at

The GeneChip® Mouse Tiling 2.0R Array Set is designed for chromatin immunoprecipitation (ChIP) experiments. This set of seven arrays contains approximately 45 million oligonucleotide probes to interrogate the mouse genome. Each array in the set contains over 6.5 million perfect match probes to specifically interrogate genomic regions.
Sequences used in the design of the Mouse Tiling 2.0R Array Set were selected from NCBI mouse genome assembly (Build 33). Repetitive elements were removed by RepeatMasker. The Mouse Tiling 2.0R Array Set is available either as a whole-genome set of seven arrays (P/N 900852), or individual arrays from the set may be purchased separately.
Probes are tiled at an average resolution of 35 base pairs, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10bp between probes. Oligonucleotide probes are synthesized in situ complementary to each corresponding sequence.

BPMAP and other files can be downloaded from the Affymetrix Web site below.
Web link
Submission date Feb 01, 2008
Last update date Jun 03, 2009
Organization Affymetrix, Inc.
Phone 888-362-2447
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
Samples (53) GSM279653, GSM291467, GSM291474, GSM291481, GSM291490, GSM291491 
Series (13)
GSE11062 Genome-Wide Gli3 Binding Sites in the E11.5 Mouse Limb Bud
GSE11077 A Genome-Scale Analysis of the Cis-Regulatory Circuitry Underlying Hedgehog Mediated Patterning of the Mammalian Limb
GSE11576 RNA mapping and ChIP with tiling arrays in FGF-stimulated NIH3T3 cells

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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