 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Apr 18, 2008 |
| Title |
[pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Pseudomonas |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
See manufacturer's web site.
|
| |
|
| Description |
This is an Affymetrix custom-commercial tiling array that covers the IncP-7 plasmid pCAR1 (RefSeq: NC_004444) at 9-bp density.
BPMAP files are provided as supplementary files. pCAR1_8b520435FF-3.bpmap represents the forward strand of pCAR1, and pCAR1_8b520435FR-3.bpmap represents the reverse strand of pCAR1.
|
| |
|
| Contributor(s) |
Miyakoshi M, Nishida H, Shintani M, Nojiri H |
| Submission date |
Mar 17, 2008 |
| Last update date |
Dec 10, 2013 |
| Contact name |
Masatoshi Miyakoshi |
| E-mail(s) |
mmiyakoshi@ige.tohoku.ac.jp
|
| Organization name |
Tohoku University
|
| Department |
Department of Environmental Life Sciences
|
| Lab |
Laboratory of Microbial Genetics
|
| Street address |
Aoba-ku, Katahira, 2-1-1
|
| City |
Sendai |
| State/province |
Miyagi |
| ZIP/Postal code |
980-8577 |
| Country |
Japan |
| |
|
| Samples (54)
|
GSM275463, GSM275464, GSM275465, GSM275466, GSM380019, GSM380020
GSM380021, GSM546283, GSM546288, GSM546289, GSM707304, GSM707305, GSM707306, GSM707307, GSM707308, GSM707309, GSM973506, GSM973507, GSM973508, GSM973509, GSM973510, GSM973511, GSM973512, GSM973513, GSM973514, GSM973515, GSM973516, GSM973517, GSM1281602, GSM1281603, GSM1281604, GSM1281605, GSM1281606, GSM1281607, GSM1382250, GSM1382251, GSM1382252, GSM1867052, GSM1867053, GSM1867054, GSM1867055, GSM1867056, GSM1867057, GSM1867058, GSM1867059, GSM1867060, GSM2572222, GSM2572223, GSM2572224, GSM2572225, GSM2572226, GSM2572227, GSM2572228, GSM2572229
|
| Series (11)
|
| GSE10862 |
High-resolution mapping of the pCAR1 plasmid transcriptomes in Pseudomonas |
| GSE15217 |
Response of the Pseudomonas host chromosomal transcriptome to carriage of the IncP-7 plasmid pCAR1. |
| GSE21968 |
Pmr, a histone-like protein H1 (H-NS) family protein encoded by the IncP-7 plasmid pCAR1, is a key global regulator that alters host function |
| GSE28568 |
Alterations of RNA maps of IncP-7 plasmid pCAR1 in various Pseudomonas bacteria. |
| GSE39636 |
Modulation of primary cell function of host Pseudomonas bacteria by conjugative plasmid pCAR1 |
| GSE53068 |
Cooperative function of the three different kinds of nucleoid-associated proteins encoded on the IncP-7 plasmid pCAR1 [pCAR1 plasmid chip] |
| GSE53069 |
Cooperative function of the three different kinds of nucleoid-associated proteins encoded on the IncP-7 plasmid pCAR1 |
| GSE56856 |
Effects of carbazole-degradative plasmid pCAR1 on biofilm morphology in three Pseudomonas strains. |
| GSE72638 |
MvaT family proteins encoded on IncP-7 plasmid pCAR1 and the host chromosome regulate host transcriptome cooperatively but differently (pCAR1) |
| GSE72639 |
MvaT family proteins encoded on IncP-7 plasmid pCAR1 and the host chromosome regulate host transcriptome cooperatively but differently |
| GSE97565 |
Divalent cations promote the transfer of the IncP-7 plasmid pCAR1 among different Pseudomonas hosts |
|
| Supplementary file |
Size |
Download |
File type/resource |
| GPL6591_8b520435FF-3.bpmap.txt.gz |
415.2 Kb |
(ftp)(http) |
TXT |
| GPL6591_8b520435FR-3.bpmap.txt.gz |
414.6 Kb |
(ftp)(http) |
TXT |
| GPL6591_pCAR1_8b520435FF-3.bpmap.gz |
407.3 Kb |
(ftp)(http) |
BPMAP |
| GPL6591_pCAR1_8b520435FR-3.bpmap.gz |
415.5 Kb |
(ftp)(http) |
BPMAP |
|
|
|
|
 |
Less...
More...