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Status
Public on Oct 01, 2008
Title
INDAC Drosophila melanogaster 15K v5.0
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Drosophila melanogaster Manufacturer
Illumina
Manufacture protocol
15,158 oligonucleotide probes representing all known and predicted open-reading-frames, based on release 4.1 of the Drosophila melanogaster genome were synthesized. The long oligonucleotide sequences were designed by the International Drosophila Array Consortium (INDAC) using a custom implementation of OligoArray2. The oligonucleotides were designed with size ranges between 65-69 nucleotides, a minimal Tm window, bias towards the 3’-ends of transcripts, and minimal sequence similarity to other genes. The oligonucleotide sequences can be downloaded from Flymine
Web link
http://www.flymine.org/release-5.0/aspect.do?name=INDAC Contributor(s)
Lebo MS , Sanders LE , Sun F , Arbeitman MN Submission date
Apr 30, 2008
Last update date
Oct 01, 2008
Contact name
Matthew S Lebo
Organization name
University of Southern California
Department
Molecular and Copmutational Biology
Lab
Arbeitman
Street address
1040 Child's Way
City
Los Angeles
State/province
CA
ZIP/Postal code
90254
Country
USA
Samples (151)
GSM285605 , GSM285606 , GSM285643 , GSM285644 , GSM285645 , GSM285646
GSM285647 ,
GSM285649 ,
GSM285652 ,
GSM285653 ,
GSM285728 ,
GSM285729 ,
GSM285743 ,
GSM285756 ,
GSM285757 ,
GSM285758 ,
GSM285759 ,
GSM285761 ,
GSM285762 ,
GSM285763 ,
GSM285764 ,
GSM285765 ,
GSM285766 ,
GSM285767 ,
GSM285768 ,
GSM285769 ,
GSM285770 ,
GSM285771 ,
GSM285772 ,
GSM285773 ,
GSM285774 ,
GSM285775 ,
GSM285776 ,
GSM285777 ,
GSM285778 ,
GSM285779 ,
GSM285780 ,
GSM285781 ,
GSM285782 ,
GSM285783 ,
GSM285784 ,
GSM285785 ,
GSM285786 ,
GSM285787 ,
GSM285788 ,
GSM285789 ,
GSM285790 ,
GSM285791 ,
GSM285792 ,
GSM285793 ,
GSM285794 ,
GSM285795 ,
GSM285797 ,
GSM285798 ,
GSM285800 ,
GSM285801 ,
GSM285802 ,
GSM285803 ,
GSM285804 ,
GSM285805 ,
GSM285806 ,
GSM285807 ,
GSM285809 ,
GSM285810 ,
GSM285811 ,
GSM285816 ,
GSM285817 ,
GSM285819 ,
GSM285820 ,
GSM285821 ,
GSM285822 ,
GSM285823 ,
GSM285825 ,
GSM285826 ,
GSM285828 ,
GSM285829 ,
GSM285830 ,
GSM285833 ,
GSM285834 ,
GSM285835 ,
GSM285836 ,
GSM285837 ,
GSM285838 ,
GSM285839 ,
GSM285840 ,
GSM285842 ,
GSM285843 ,
GSM285845 ,
GSM297121 ,
GSM297122 ,
GSM297123 ,
GSM297124 ,
GSM297125 ,
GSM297126 ,
GSM297127 ,
GSM297128 ,
GSM297566 ,
GSM297567 ,
GSM297568 ,
GSM297569 ,
GSM297570 ,
GSM297571 ,
GSM297576 ,
GSM297578 ,
GSM297580 ,
GSM297581 ,
GSM297730 ,
GSM297731 ,
GSM297732 ,
GSM297733 ,
GSM297734 ,
GSM297735 ,
GSM297736 ,
GSM297737 ,
GSM297738 ,
GSM297739 ,
GSM297740 ,
GSM297741 ,
GSM435100 ,
GSM435101 ,
GSM435102 ,
GSM556971 ,
GSM556972 ,
GSM556973 ,
GSM556974 ,
GSM556975 ,
GSM556976 ,
GSM556977 ,
GSM556978 ,
GSM556979 ,
GSM556980 ,
GSM556981 ,
GSM556982 ,
GSM556983 ,
GSM556984 ,
GSM556985 ,
GSM556986 ,
GSM556987 ,
GSM556988 ,
GSM556989 ,
GSM556990 ,
GSM647047 ,
GSM647048 ,
GSM647049 ,
GSM647050 ,
GSM647051 ,
GSM647052 ,
GSM647053 ,
GSM647054 ,
GSM647055 ,
GSM647056 Series (7)
GSE11311 Drosophila Sex Hierarchy Regulated Gene Expression in 48 hour APF Pupae
GSE11313 Drosophila Gene Expression During Metamorphosis in Wild Type and Germline Minus Pupae
GSE11316 Whole genome microarray analysis of the Drosophila morphogenetic process
GSE11752 FRUM and EcR-regulated expression during Drosophila development
GSE17444 Drosophila elevated CO2 (hypercapnia) microarray
GSE22390 Dynamic, mating-induced gene expression changes in female head and brain tissues of Drosophila melanogaster
GSE26348 The Genetic Basis of Rapidly Evolving Male Genital Morphology in Drosophila.
Data table header descriptions ID GB_ACC GenBank accession number of sequence used to design oligonucleotide probe
CLONE_ID Flybase ID Number
SPOT_ID Control Sequences and Blank Spots
GENE_SYMBOL Gene Symbol
GENE_NAME Full Gene Name
GENE_ID CG Number
SEQUENCE Sequence of Oligonucleotide
Data table ID GB_ACC CLONE_ID SPOT_ID GENE_SYMBOL GENE_NAME GENE_ID SEQUENCE DAC001A01
--Z49777
ACCGGTTGCTTTGGTGGTTACTACTTGCCAACATTGGTTCAGTTCGAGCCTGGTCTCACTTCTCCTCCT
DAC001A02
--Z49777
ACCGGTTGCTTTGGTGGTTACTACTTGCCAACATTGGTTCAGTTCGAGCCTGGTCTCACTTCTCCTCCT
DAC001A03
--Z49777
ACCGGTTGCTTTGGTGGTTACTACTTGCCAACATTGGTTCAGTTCGAGCCTGGTCTCACTTCTCCTCCT
DAC001A04
--Z49777
ACCGGTTGCTTTGGTGGTTACTACTTGCCAACATTGGTTCAGTTCGAGCCTGGTCTCACTTCTCCTCCT
DAC001A05
--Z49777
ACCGGTTGCTTTGGTGGTTACTACTTGCCAACATTGGTTCAGTTCGAGCCTGGTCTCACTTCTCCTCCT
DAC001A06
--Z49777
ACCGGTTGCTTTGGTGGTTACTACTTGCCAACATTGGTTCAGTTCGAGCCTGGTCTCACTTCTCCTCCT
DAC001A07
--Z49777
ACCGGTTGCTTTGGTGGTTACTACTTGCCAACATTGGTTCAGTTCGAGCCTGGTCTCACTTCTCCTCCT
DAC001A08
--Z49777
ACCGGTTGCTTTGGTGGTTACTACTTGCCAACATTGGTTCAGTTCGAGCCTGGTCTCACTTCTCCTCCT
DAC001A09
--Z49777
ACCGGTTGCTTTGGTGGTTACTACTTGCCAACATTGGTTCAGTTCGAGCCTGGTCTCACTTCTCCTCCT
DAC001A10
--Z49777
ACCGGTTGCTTTGGTGGTTACTACTTGCCAACATTGGTTCAGTTCGAGCCTGGTCTCACTTCTCCTCCT
DAC001A11
--Z49777
ACCGGTTGCTTTGGTGGTTACTACTTGCCAACATTGGTTCAGTTCGAGCCTGGTCTCACTTCTCCTCCT
DAC001A12
--Z49777
ACCGGTTGCTTTGGTGGTTACTACTTGCCAACATTGGTTCAGTTCGAGCCTGGTCTCACTTCTCCTCCT
DAC001A13
--Q9LU32
GCCGTAGAAATGACGCGATGATGGGAATTGAGAAAGGGAAGTGGAGTGTTAGTCCCACGTGTTGGAGGA
DAC001A14
--Q9LU32
GCCGTAGAAATGACGCGATGATGGGAATTGAGAAAGGGAAGTGGAGTGTTAGTCCCACGTGTTGGAGGA
DAC001A15
--Q9LU32
GCCGTAGAAATGACGCGATGATGGGAATTGAGAAAGGGAAGTGGAGTGTTAGTCCCACGTGTTGGAGGA
DAC001A16
--Q9LU32
GCCGTAGAAATGACGCGATGATGGGAATTGAGAAAGGGAAGTGGAGTGTTAGTCCCACGTGTTGGAGGA
DAC001A17
--Q9LU32
GCCGTAGAAATGACGCGATGATGGGAATTGAGAAAGGGAAGTGGAGTGTTAGTCCCACGTGTTGGAGGA
DAC001A18
--Q9LU32
GCCGTAGAAATGACGCGATGATGGGAATTGAGAAAGGGAAGTGGAGTGTTAGTCCCACGTGTTGGAGGA
DAC001A19
--Q9LU32
GCCGTAGAAATGACGCGATGATGGGAATTGAGAAAGGGAAGTGGAGTGTTAGTCCCACGTGTTGGAGGA
DAC001A20
--Q9LU32
GCCGTAGAAATGACGCGATGATGGGAATTGAGAAAGGGAAGTGGAGTGTTAGTCCCACGTGTTGGAGGA
15776 1885 Kbytes .Supplementary data files not provided
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