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Status
Public on Oct 04, 2008
Title
Low Density Microvascular Differentiation Array (LD-MDA) version 2.0
Technology type
RT-PCR
Distribution
virtual
Organism
Homo sapiens Manufacturer
Applied Biosystems
Manufacture protocol
Applied Biosystems Primer Assay - gene selection based on LEC vs BEC differential expressions. The 384-well micro-fluidic cards were produced with pre-designed primer pairs and FAM-labeled TaqMan probes for each of the 96 selected genes in duplicate, with two sample reservoirs per card.
Description
Microfluidic 384-well TaqMan™ real time RT-PCR platform
Submission date
Apr 30, 2008
Last update date
Oct 04, 2008
Contact name
Jay Woo Shin
E-mail(s)
jay.shin@gsc.riken.jp Organization name
ETH Zurich
Department
Institute of Pharmaceutical Sciences
Lab
Michael Detmar
Street address
Wolfgang-Paulistrasse 10; HCI H394
City
Zurich
State/province
Zurich
ZIP/Postal code
8093
Country
Switzerland
Samples (43)
GSM285685 , GSM285686 , GSM285687 , GSM285688 , GSM285689 , GSM285690
GSM285691 ,
GSM285692 ,
GSM285693 ,
GSM285694 ,
GSM285695 ,
GSM285696 ,
GSM285697 ,
GSM285698 ,
GSM285699 ,
GSM285700 ,
GSM285701 ,
GSM285702 ,
GSM285703 ,
GSM285704 ,
GSM285705 ,
GSM285706 ,
GSM285707 ,
GSM285708 ,
GSM285709 ,
GSM285710 ,
GSM285711 ,
GSM285712 ,
GSM285713 ,
GSM285714 ,
GSM285715 ,
GSM285716 ,
GSM285717 ,
GSM285718 ,
GSM285719 ,
GSM285720 ,
GSM285721 ,
GSM285722 ,
GSM285723 ,
GSM285724 ,
GSM285725 ,
GSM285726 ,
GSM285727 Series (2)
GSE11307 Quantification of vascular lineage-specific differentiation, psoriasis (chronic inflammation) study
GSE11308 Quantification of vascular lineage-specific differentiation
Data table header descriptions ID Symbol Gene symbol
Title Gene name (Title)
Assay_ID Catalog (assay) number of the primer
Type Gene association (classification); L = lymphatic-specific, B = blood vessel-specific, EC= panendothelial, HK= housekeeping (endogenous)
GB_LIST RefSeq accession number
Public Genbank mRNA SPOT_ID
Data table ID Symbol Title Assay_ID Type GB_LIST Public Genbank mRNA SPOT_ID 1
PPIA
peptidylprolyl isomerase A (cyclophilin A)
Hs99999904_m1
HK
NM_203430.1,NM_203431.1,NM_021130.2 Y00052.1,AK026569.1,BC005320.1,BC005982.1,BC000689.2,BC003026.1,BC073992.1,BC093076.1,BU786475.1,CD014106.1,BM806224.1,BC037419.1,AK130101.1,BM909285.1,BC018843.2,BC013915.1
2
FLT4
fms-related tyrosine kinase 4
Hs00176607_m1
L
NM_182925.1,NM_002020.1 X69878.1,AB209637.1,AY233382.1,AY233383.1
3
INHBA
inhibin, beta A (activin A, activin AB alpha polypeptide)
Hs00170103_m1
B
NM_002192.2 J03634.1,M13436.1,AF218018.1,BC007858.2,AK222742.1
4
CDH2
cadherin 2, type 1, N-cadherin (neuronal)
Hs00169953_m1
B
NM_001792.2 M34064.1,X54315.1,X57548.1,S42303.1,BC036470.1
5
IL6
interleukin 6 (interferon, beta 2)
Hs00174131_m1
B
NM_000600.1 X04403.1,M14584.1,M18403.1,M29150.1,X04430.1,X04602.1,M54894.1,S56892.1,CR450296.1,BT019748.1,BT019749.1,A09363.1,BC015511.1
6
HYAL1
hyaluronoglucosaminidase 1
Hs00201046_m1
L
NM_033159.2,NM_153281.1,NM_153283.1,NM_153285.1,NM_007312.3 U03056.2,U96078.1,AF173154.1,BC025774.1,AF502905.1,AF502907.1,AK097287.1,BC035695.1
7
ACTB
actin, beta
Hs99999903_m1
HK
NM_001101.2 X63432.1,AK025375.1,BC001301.1,BC002409.2,AK058019.1,BC016045.1,AK130062.1,AK130157.1,BC013380.2,BC014861.1,BC023204.1,BC013835.1,BC014401.1,AK222925.1,AK223032.1,AK223055.1
8
IL7
interleukin 7
Hs00174202_m1
L
NM_000880.2 J04156.1,BC047698.1
9
CD44
CD44 antigen (homing function and Indian blood group system)
Hs00174139_m1
B
NM_001001389.1,NM_001001390.1,NM_001001391.1,NM_000610.3 M59040.1,M24915.1,M25078.1,X56794.1,X55150.1,X66733.1,U40373.1,S66400.1,AJ251595.1,BC004372.1,BC067348.1,AK129808.1,BC052287.1,AY101192.1,AY101193.1,AL832642.2
10
ICAM1
intercellular adhesion molecule 1 (CD54), human rhinovirus receptor
Hs00164932_m1
B
NM_000201.1 M24283.1,J03132.1,X06990.1,AF340038.1,AF340039.1,BC015969.2,AK130659.1,BT006854.1
11
18S
Eukaryotic 18S rRNA
Hs99999901_s1
HK
18S
12
GLRB
glycine receptor, beta
Hs00168151_m1
L
NM_000824.2 U33267.1,AF094754.1,AF094755.1,BC022502.1,BC032635.1
13
COL1A2
collagen, type I, alpha 2
Hs00164099_m1
B
NM_000089.3 Y00724.1,Z74616.1,J03464.1,BC042586.1,BC054498.1,AK223175.1
14
CXADR
coxsackie virus and adenovirus receptor
Hs00154661_m1
L
NM_001338.3 Y07593.1,BC010536.1,BC003684.1,BM547121.1
15
PLCE1
phospholipase C, epsilon 1
Hs00275279_m1
L
NM_016341.2 AF117948.1,AF190642.2,AB040949.2,AF170071.1
16
TNFSF15
tumor necrosis factor (ligand) superfamily, member 15
Hs00353710_s1
B
NM_005118.2 AF039390.1,BC069435.1,BC074941.2,BC074940.2,AF520785.1
17
TEK
TEK tyrosine kinase, endothelial (venous malformations, multiple cutaneous and mucosal)
Hs00176096_m1
EC
NM_000459.1 L06139.1,AB208796.1,BC035514.1,AB086825.1
18
GFRA1
GDNF family receptor alpha 1
Hs00237133_m1
L
NM_145793.1,NM_005264.2 AF038421.1,AF042080.1,U95847.1,U97144.1,BC014962.1
19
IL8
interleukin 8
Hs00174103_m1
B
NM_000584.2 M17017.1,M26383.1,Z11686.1,Y00787.1,CR542151.1,AK131067.1,BC013615.1,BT007067.1
20
FGF12
fibroblast growth factor 12
Hs00253282_m1
L
NM_021032.2 U66197.1,AK125307.1
96 13 Kbytes .Supplementary data files not provided
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