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Platform GPL6803 Query DataSets for GPL6803
Status Public on Oct 04, 2008
Title Low Density Microvascular Differentiation Array (LD-MDA) version 2.0
Technology type RT-PCR
Distribution virtual
Organism Homo sapiens
Manufacturer Applied Biosystems
Manufacture protocol Applied Biosystems Primer Assay - gene selection based on LEC vs BEC differential expressions. The 384-well micro-fluidic cards were produced with pre-designed primer pairs and FAM-labeled TaqMan probes for each of the 96 selected genes in duplicate, with two sample reservoirs per card.
Description Microfluidic 384-well TaqMan™ real time RT-PCR platform
Submission date Apr 30, 2008
Last update date Oct 04, 2008
Contact name Jay Woo Shin
Organization name ETH Zurich
Department Institute of Pharmaceutical Sciences
Lab Michael Detmar
Street address Wolfgang-Paulistrasse 10; HCI H394
City Zurich
State/province Zurich
ZIP/Postal code 8093
Country Switzerland
Samples (43) GSM285685, GSM285686, GSM285687, GSM285688, GSM285689, GSM285690 
Series (2)
GSE11307 Quantification of vascular lineage-specific differentiation, psoriasis (chronic inflammation) study
GSE11308 Quantification of vascular lineage-specific differentiation

Data table header descriptions
Symbol Gene symbol
Title Gene name (Title)
Assay_ID Catalog (assay) number of the primer
Type Gene association (classification); L = lymphatic-specific, B = blood vessel-specific, EC= panendothelial, HK= housekeeping (endogenous)
GB_LIST RefSeq accession number
Public Genbank mRNA

Data table
ID Symbol Title Assay_ID Type GB_LIST Public Genbank mRNA SPOT_ID
1 PPIA peptidylprolyl isomerase A (cyclophilin A) Hs99999904_m1 HK NM_203430.1,NM_203431.1,NM_021130.2 Y00052.1,AK026569.1,BC005320.1,BC005982.1,BC000689.2,BC003026.1,BC073992.1,BC093076.1,BU786475.1,CD014106.1,BM806224.1,BC037419.1,AK130101.1,BM909285.1,BC018843.2,BC013915.1
2 FLT4 fms-related tyrosine kinase 4 Hs00176607_m1 L NM_182925.1,NM_002020.1 X69878.1,AB209637.1,AY233382.1,AY233383.1
3 INHBA inhibin, beta A (activin A, activin AB alpha polypeptide) Hs00170103_m1 B NM_002192.2 J03634.1,M13436.1,AF218018.1,BC007858.2,AK222742.1
4 CDH2 cadherin 2, type 1, N-cadherin (neuronal) Hs00169953_m1 B NM_001792.2 M34064.1,X54315.1,X57548.1,S42303.1,BC036470.1
5 IL6 interleukin 6 (interferon, beta 2) Hs00174131_m1 B NM_000600.1 X04403.1,M14584.1,M18403.1,M29150.1,X04430.1,X04602.1,M54894.1,S56892.1,CR450296.1,BT019748.1,BT019749.1,A09363.1,BC015511.1
6 HYAL1 hyaluronoglucosaminidase 1 Hs00201046_m1 L NM_033159.2,NM_153281.1,NM_153283.1,NM_153285.1,NM_007312.3 U03056.2,U96078.1,AF173154.1,BC025774.1,AF502905.1,AF502907.1,AK097287.1,BC035695.1
7 ACTB actin, beta Hs99999903_m1 HK NM_001101.2 X63432.1,AK025375.1,BC001301.1,BC002409.2,AK058019.1,BC016045.1,AK130062.1,AK130157.1,BC013380.2,BC014861.1,BC023204.1,BC013835.1,BC014401.1,AK222925.1,AK223032.1,AK223055.1
8 IL7 interleukin 7 Hs00174202_m1 L NM_000880.2 J04156.1,BC047698.1
9 CD44 CD44 antigen (homing function and Indian blood group system) Hs00174139_m1 B NM_001001389.1,NM_001001390.1,NM_001001391.1,NM_000610.3 M59040.1,M24915.1,M25078.1,X56794.1,X55150.1,X66733.1,U40373.1,S66400.1,AJ251595.1,BC004372.1,BC067348.1,AK129808.1,BC052287.1,AY101192.1,AY101193.1,AL832642.2
10 ICAM1 intercellular adhesion molecule 1 (CD54), human rhinovirus receptor Hs00164932_m1 B NM_000201.1 M24283.1,J03132.1,X06990.1,AF340038.1,AF340039.1,BC015969.2,AK130659.1,BT006854.1
11 18S Eukaryotic 18S rRNA Hs99999901_s1 HK 18S
12 GLRB glycine receptor, beta Hs00168151_m1 L NM_000824.2 U33267.1,AF094754.1,AF094755.1,BC022502.1,BC032635.1
13 COL1A2 collagen, type I, alpha 2 Hs00164099_m1 B NM_000089.3 Y00724.1,Z74616.1,J03464.1,BC042586.1,BC054498.1,AK223175.1
14 CXADR coxsackie virus and adenovirus receptor Hs00154661_m1 L NM_001338.3 Y07593.1,BC010536.1,BC003684.1,BM547121.1
15 PLCE1 phospholipase C, epsilon 1 Hs00275279_m1 L NM_016341.2 AF117948.1,AF190642.2,AB040949.2,AF170071.1
16 TNFSF15 tumor necrosis factor (ligand) superfamily, member 15 Hs00353710_s1 B NM_005118.2 AF039390.1,BC069435.1,BC074941.2,BC074940.2,AF520785.1
17 TEK TEK tyrosine kinase, endothelial (venous malformations, multiple cutaneous and mucosal) Hs00176096_m1 EC NM_000459.1 L06139.1,AB208796.1,BC035514.1,AB086825.1
18 GFRA1 GDNF family receptor alpha 1 Hs00237133_m1 L NM_145793.1,NM_005264.2 AF038421.1,AF042080.1,U95847.1,U97144.1,BC014962.1
19 IL8 interleukin 8 Hs00174103_m1 B NM_000584.2 M17017.1,M26383.1,Z11686.1,Y00787.1,CR542151.1,AK131067.1,BC013615.1,BT007067.1
20 FGF12 fibroblast growth factor 12 Hs00253282_m1 L NM_021032.2 U66197.1,AK125307.1

Total number of rows: 96

Table truncated, full table size 13 Kbytes.

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Supplementary data files not provided

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