NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL6906 Query DataSets for GPL6906
Status Public on Dec 22, 2008
Title DSBB Maize 1k v.1.0
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Zea mays
Manufacturer MWG Biotech
Manufacture protocol MWG microarrays are made by spotting 50-mer oligonucleotides onto epoxy treated glass slides. For more details see manufacturer's web site
 
 
Submission date May 27, 2008
Last update date Dec 22, 2008
Contact name Rosanna Marino
E-mail(s) rosanna.marino@unimi.it
Phone 00390250315042
Fax 00390250315044
URL http://users.unimi.it/camelot/
Organization name Universita' degli studi di Milano
Department Department of biomolecular sciences and biothecnology
Lab Plant molecular genetics
Street address Via celoria 26
City Milano
State/province Milano
ZIP/Postal code 20133
Country Italy
 
Samples (16) GSM291230, GSM291231, GSM291232, GSM291233, GSM291234, GSM291235 
Series (1)
GSE11568 Transcriptional profiling of Zea mays 10 DAP(days after pollination) kernels : water stress vs well-watered control

Data table header descriptions
ID
NAME MWG gene name
ZmGI ZmGI accession number for sequences used to design oligonucleotide probe (http://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=maize)
DESCRIPTION Gene description
SEQUENCE Sequence of oligonucleotide spotted
SPOT_ID Zea mays gene index accessions

Data table
ID NAME ZmGI DESCRIPTION SEQUENCE SPOT_ID
1 a116pe0001#1 TC327322 homologue to UP|Q9ZWJ6_MAIZE (Q9ZWJ6) MAP kinase 4, complete GAGATATATAGAGCCAATTTTTGCCCGATTTGCCTGTCTGCTCGGGACTG ZmGI: TC327322
2 a116pe0002#1 TC348051 UP|Q9SX19_MAIZE (Q9SX19) Cysteine protease Mir1, complete TGTAATGAAGTTACATAAACTCAAATAAAGTCGTAATCGTAATGGTAAAA ZmGI: TC348051
3 a116pe0003#1 TC324779 homologue to UP|O22638_MAIZE (O22638) Aluminum-induced protein, partial (97%) CATCACAACTCAAGCACCTATAGTAGTACCTCACAATGACAGGAAAAAAG ZmGI: TC324779
4 a116pe0004#1 TC367447 UP|Q9ZTS8_MAIZE (Q9ZTS8) Anionic peroxidase H, complete AAGAACTGTACACTGCCAAATTGGTCCCACAATAAGAACTACTATGAGAT ZmGI: TC367447
5 a116pe0005#1 TC327981 homologue to UP|O49163_MAIZE (O49163) NADPH HC toxin reductase, complete TTTGGAAACTAGACATACTCCAATAAAACAAGAGGTAAAGAAACGGAATT ZmGI: TC327981
6 a116pe0006#1 TC366494 UP|Q9ZTQ5_MAIZE (Q9ZTQ5) Cell wall invertase , complete CAGCAGGCTCGTCGTCCTCATGTGCAACGACCCTACTAACTCCACCTTCG ZmGI: TC366494
7 a116pe0007#1 TC315974 UP|O81638_MAIZE (O81638) Pullulanase-type starch debranching enzyme, complete ATAGATTGAATAAGACGTTGCCCAAGTTGCCAAGGCACGCTTTGCCATAT ZmGI: TC315974
8 a116pe0008#1 TC316653 UP|Q9FR85_MAIZE (Q9FR85) MADS box protein 1 (M5 protein), complete TGAGAGGTTGGAAGACTGCTCCATTGAAGAGCTGCACAGTTTGGAAGTCA ZmGI: TC316653
9 a116pe0010#1 TC360511 similar to unknown protein {Oryza sativa (japonica cultivar-group)} (exp=0; wgp=1; cg=0), partial (12%) TAGGGCACCGTGCTGGTTCTTGGGCTACTGACATTGTTAGCTTGTGATCC ZmGI: TC360511
10 a116pe0011#2 TC318250 UP|Q9FQA3_MAIZE (Q9FQA3) Glutathione S-transferase GST 36 , complete CCCTCTGTTCCATTTCAGAATGGTAGTCCCATAATAATGCATATACATCA ZmGI: TC318250
11 a116pe0012#1 TC364534 homologue to UP|Q946V6_MAIZE (Q946V6) 19kD alpha zein B1, complete ACTAGCAACATAGAAAGCACAATAGTGTACCAACAATGGCAGCCAAAATA ZmGI: TC364534
12 a116pe0013#2 TC345588 gb|U42796.1|ZMU42796 Zea mays 18S ribosomal RNA gene, partial sequence, partial (69%) CTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAAC ZmGI: TC345588
13 a116pe0014#1 TC326322 Zea mays clone Contig77 mRNA sequence TACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA ZmGI: TC326322
14 a116pe0015#1 TC321393 homologue to GB|AAS59830.1|45385970|AY551924 MADS-box protein RMADS219 {Oryza sativa (japonica cultivar-group)} (exp=-1; wgp=0; cg=0), complete TCTCTCTCTCTGCCAGAGCAGCGGAACTCTGCACCGTGAGTAACTTAATT ZmGI: TC321393
15 a116pe0016#1 TC323049 similar to UP|MADS4_ORYSA (Q40703) MADS-box transcription factor 4 (OsMADS4), partial (95%) ATTAAGACTGAAATGTGCAATTAAGTTGTAGCCCGTGCTTGCTTGGTCTC ZmGI: TC323049
16 a116pe0017#1 TC336788 similar to UP|MADS4_ORYSA (Q40703) MADS-box transcription factor 4 (OsMADS4), partial (95%) ATGAAGTCTGTCAGTTGTTACTACGATGTGGTCTTGTCTTGTGCGTCTCT ZmGI: TC336788
17 a116pe0018#1 TC334656 UP|Q8GT27_MAIZE (Q8GT27) Alternative oxidase AOX1, complete TCGACTTGGTTGGTTCCACAGAGAAAACTTTATATCCGATTGTAACAGAG ZmGI: TC334656
18 a116pe0019#1 TC322943 UP|Q8L7W9_MAIZE (Q8L7W9) AP2 domain transcription factor, complete GCGTCCACAGTGACCACCAGTGTGCCGACACGGGTGGCGGTTCCGCAGGA ZmGI: TC322943
19 a116pe0020#1 TC356812 UP|Q41833_MAIZE (Q41833) MLIP15 (Gmlip15 protein), complete GTTTGGAGTTGTAATATCTTATCTTGCTTATGAAATCGAATATGCCTATA ZmGI: TC356812
20 a116pe0021#1 TC344839 UP|Q03462_MAIZE (Q03462) Opaque2 heterodimerizing protein 1, complete AGAATATGATAAATTAACAGTTTCACATACTTTGTAGTGGACATTGCTAA ZmGI: TC344839

Total number of rows: 2000

Table truncated, full table size 348 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap