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Status
Public on Sep 10, 2008
Title
Nimblegen_HD2_Arabidopsis
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Arabidopsis thaliana Manufacturer
Roche NimbleGen
Manufacture protocol
please see manufacturer's web site
Description
The probes were based on TIGR5 Arabidopsis genome, release date 01212004.
Submission date
Aug 06, 2008
Last update date
Sep 10, 2008
Contact name
Steve E Jacobsen
E-mail(s)
yaniki@ucla.edu Phone
(310) 825-0182
URL
http://www.mcdb.ucla.edu/Research/Jacobsen/index.html Organization name
University of California, Los Angeles
Department
Molecular Cell and Developmental Biology
Lab
Jacobsen lab
Street address
621 Charles E. Young Dr. South
City
Los Angeles
State/province
CA
ZIP/Postal code
90095-1606
Country
USA
Samples (34)
GSM310840 , GSM310841 , GSM310842 , GSM310843 , GSM490202 , GSM490203
GSM490204 ,
GSM490205 ,
GSM490206 ,
GSM490207 ,
GSM490208 ,
GSM490209 ,
GSM490210 ,
GSM490211 ,
GSM490212 ,
GSM490213 ,
GSM553424 ,
GSM553426 ,
GSM553503 ,
GSM553504 ,
GSM833318 ,
GSM833319 ,
GSM833320 ,
GSM833321 ,
GSM910290 ,
GSM910291 ,
GSM910292 ,
GSM910293 ,
GSM910294 ,
GSM910295 ,
GSM1399619 ,
GSM1399620 ,
GSM1399621 ,
GSM1399622 Series (7)
GSE12383 Genome wide profiling of H3K9me2 in Arabidopsis thaliana
GSE19654 INTACT method for gene expression and chromatin profiling of individual cell types within a tissue
GSE33719 MeDIP-chip of zdp mutant
GSE37075 Loss of the DNA methyltransferase MET1 induces H3K9 hypermethylation at PcG target genes in Arabidopsis, and relocation of H3K27 trimethylation to transposons
GSE39405 The SET-domain protein SUVR5 mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation independent manner
GSE58030 The SET-domain protein SUVR5 mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation independent manner [ChIP-chip]
GSE83606 Loss of the DNA methyltransferase MET1 induces H3K9 hypermethylation at PcG target genes in Arabidopsis, and relocation of H3K27 trimethylation to transposons [array]
Data table header descriptions ID SEQUENCE oligonucleotide sequence of each probe, 5'-3'
Chromosome chromosome number and TIGR5 Arabidopsis genome release date (01212004)
RANGE_START the start position (relative to the RANGE_GB accession
RANGE_END the end position (relative to the RANGE_GB accession
RANGE_GB ACCESSION.VERSION corresponding to chromosome
Data table ID SEQUENCE Chromosome RANGE_START RANGE_END RANGE_GB CHR1V01212004FS000000001
CCCTAAACCCTAAACCCTAAACCCTAAACCTCTGAATCCTTAATCCC
CHR1v01212004
1
47
NC_003070.5 CHR1V01212004FS000000061
CTTTAAATCCTACATCCATGAATCCCTAAATACCTAATTCCCTAAACCCGAA
CHR1v01212004
61
112
NC_003070.5 CHR1V01212004FS000000121
CTCTGGTTGAAAATCATTGTGTATATAATGATAATTTTATCGTTTTTATGTAATTGCT
CHR1v01212004
121
178
NC_003070.5 CHR1V01212004FS000000181
TTGTTGTGTGTAGATTTTTTAAAAATATCATTTGAGGTCAATACAAATCCTATTTC
CHR1v01212004
181
236
NC_003070.5 CHR1V01212004FS000000241
GGTTTTCTTTCCTTCACTTAGCTATGGATGGTTTATCTTCATTTGTTATATTGGATA
CHR1v01212004
241
297
NC_003070.5 CHR1V01212004FS000000301
GCTTTGCTACGATCTACATTTGGGAATGTGAGTCTCTTATTGTAACCTTAGGGTT
CHR1v01212004
301
355
NC_003070.5 CHR1V01212004FS000000361
ATCTCAAGAATCTTATTAATTGTTTGGACTGTTTATGTTTGGACATTTATTGTCATTC
CHR1v01212004
361
418
NC_003070.5 CHR1V01212004FS000000421
ACTCCTTTGTGGAAATGTTTGTTCTATCAATTTATCTTTTGTGGGAAAATTAT
CHR1v01212004
421
473
NC_003070.5 CHR1V01212004FS000000481
TAGGGATGAAGTCTTTCTTCGTTGTTGTTACGCTTGTCATCTCATCTCTCAATGATATG
CHR1v01212004
481
539
NC_003070.5 CHR1V01212004FS000000541
GATGGTCCTTTAGCATTTATTCTGAAGTTCTTCTGCTTGATGATTTTATCCTTAGCCAAA
CHR1v01212004
541
600
NC_003070.5 CHR1V01212004FS000000601
AGGATTGGTGGTTTGAAGACACATCATATCAAAAAAGCTATCGCCTCGACGAT
CHR1v01212004
601
653
NC_003070.5 CHR1V01212004FS000000661
TTCTATCCTTGTAGCACACATTTTGGCACTCAAAAAAGTATTTTTAGATGTTTGTT
CHR1v01212004
661
716
NC_003070.5 CHR1V01212004FS000000721
TTCTTTGAAGTAGTTTCTCTTTGCAAAATTCCTCTTTTTTTAGAGTGATTTGGA
CHR1v01212004
721
774
NC_003070.5 CHR1V01212004FS000000781
AAGACTTCTCGGTACTGCAAAGTTCTTCCGCCTGATTAATTATCCATTTTACCT
CHR1v01212004
781
834
NC_003070.5 CHR1V01212004FS000000841
TAGATATTAGGTAATCTGTAAGTCAACTCATATACAACTCATAATTTAAAATAAAAT
CHR1v01212004
841
897
NC_003070.5 CHR1V01212004FS000000901
GATCGACACACGTTTACACATAAAATCTGTAAATCAACTCATATACCCGTTATTCCCA
CHR1v01212004
901
958
NC_003070.5 CHR1V01212004FS000000961
ATCATATGCTTTCTAAAAGCAAAAGTATATGTCAACAATTGGTTATAAATTATTAGAA
CHR1v01212004
961
1018
NC_003070.5 CHR1V01212004FS000001021
TTTCCACTTATGACTTAAGAACTTGTGAAGCAGAAAGTGGCAACACCCCC
CHR1v01212004
1021
1070
NC_003070.5 CHR1V01212004FS000001081
CCCCCCCCCCACCCCCCAAATTGAGAAGTCAATTTTATATAATTTAATCA
CHR1v01212004
1081
1130
NC_003070.5 CHR1V01212004FS000001141
TTTATGGTTAAGAGTTTTTTACTCTCTTTATTTTTCTTTTTCTTTTTGA
CHR1v01212004
1141
1189
NC_003070.5
2001685 240380 Kbytes .Supplementary file Size Download File type/resource GPL7143_2007-06-19_ATH1_chr_all_meth01.ndf.gz
33.7 Mb
(ftp) (http) NDF
GPL7143_2007-06-19_ATH1_chr_all_meth01.pos.gz
5.7 Mb
(ftp) (http) POS
GPL7143_2007-06-19_ATH1_chr_all_meth02.ndf.gz
33.8 Mb
(ftp) (http) NDF
GPL7143_2007-06-19_ATH1_chr_all_meth02.pos.gz
5.7 Mb
(ftp) (http) POS
GPL7143_2007-06-19_ATH1_chr_all_meth03.ndf.gz
33.8 Mb
(ftp) (http) NDF
GPL7143_2007-06-19_ATH1_chr_all_meth03.pos.gz
5.7 Mb
(ftp) (http) POS
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