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Platform GPL7146 Query DataSets for GPL7146
Status Public on Dec 08, 2008
Title TNO/Mic-B.subtilis-8.2k-v3
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Bacillus subtilis
Manufacturer Micro Array Department (MAD), University of Amsterdam, The Netherlands
Manufacture protocol An oligonucleotide library of 65-mers (Cat#BACLIB384 Sigma-Compugen Inc.), which covered 4100 open reading frames of the B. subtilis 168 genome, was spotted in duplicate on glass slides with a Generation III microarray spotter (Molecular Dynamics, Sunnyvale, California, USA) using Lucidea Spotting Pins (GE Healthcare).
Support glass
Coating aminosilane
 
Description This is a condensed platform of the full 9.2K array. The full layout is described in a supplementary file.
Previous versions of this platform have been described by Bart Keijser (GPL4415) and Anna Magdalena Zakrzewska (GPL6257)
 
Contributor(s) Kort R
Submission date Aug 07, 2008
Last update date Oct 24, 2011
Contact name Remco Kort
E-mail(s) remco.kort@tno.nl
Phone +31 30 694 4625
Fax +31 30 694 4466
URL http://www.tno.nl/microbialgenomics
Organization name TNO
Department Microbiology
Lab Microbial Genomics
Street address Utrechtseweg 48
City Zeist
ZIP/Postal code 3704HE
Country Netherlands
 
Samples (19) GSM310612, GSM310613, GSM310614, GSM310615, GSM310616, GSM310617 
Series (1)
GSE12372 Transcriptional activity of Bacillus subtilis exposed to lethal heat stress

Data table header descriptions
ID
ORF Locus tag
Gene ID
Synonym
BSORF Entry
Description
Functional Category
Gene length
Protein length
SWISS-PROT
Location (kb)
Coordinates
Orientation
EC number

Data table
ID ORF Gene ID Synonym BSORF Entry Description Functional Category Gene length Protein length SWISS-PROT Location (kb) Coordinates Orientation EC number
1 BSU38520 dltC ipa-3r BG10549 D-alanine carrier protein Cell wall1.1 234 78 P39579 3954 3954008..3954241 +
2 BSU04570 murF ydbQ BG12084 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase Cell wall1.1 1371 457 508.9 508945..510315 + 6.3.2.15
3 BSU35580 tuaD yvhD BG12691 biosynthesis of teichuronic acid (UDP-glucose 6-dehydrogenase) Cell wall1.1 1383 461 3654.6 3653172..3654554 -
4 BSU31120 yubE BG13954 unknown; similar to N-acetylmuramoyl-L-alanine amidase Cell wall1.1 846 282 3190.7 3189876..3190721 -
5 BSU33800 opuCD yvbB BG12640 glycine betaine/carnitine/choline ABC transporter (membrane protein) Transport/binding proteins and lipoproteins1.2 687 229 3467.3 3466580..3467266 -
6 BSU08840 ssuA ygbA, yzeA BG10656 aliphatic sulfonate ABC transporter (binding lipoprotein) Transport/binding proteins and lipoproteins1.2 996 332 P40400 961.5 961516..962511 +
7 BSU02770 yccK yzaE BG11340 unknown; similar to ion channel Transport/binding proteins and lipoproteins1.2 930 310 P46905 298 298018..298947 +
8 BSU04390 ydbA BG12068 unknown; similar to ABC transporter (binding protein) Transport/binding proteins and lipoproteins1.2 816 272 493.1 493114..493929 +
9 BSU35670 gtaB BG10402 UTP-glucose-1-phosphate uridylyltransferase Cell wall1.1 876 292 Q05852 3664.7 3664659..3665534 + 2.7.7.9
10 BSU34440 pbpE BG10390 penicillin-binding protein 4* (spore cortex) Cell wall1.1 1353 451 P32959 3534.5 3533151..3534503 -
11 BSU10770 wprA yisM BG11846 cell wall-associated protein precursor Cell wall1.1 2682 894 P54423 1153.1 1153094..1155775 + 3.4.21.-
12 BSU18120 alsT BG11798 amino acid carrier protein Transport/binding proteins and lipoproteins1.2 1395 465 1938.1 1938134..1939528 +
13 BSU24970 pstA yqgI, yzmD BG11377 phosphate ABC transporter (permease) Transport/binding proteins and lipoproteins1.2 882 294 P46340 2578.9 2578068..2578949 -
14 BSU26640 trkA yrdP BG11980 potassium uptake Transport/binding proteins and lipoproteins1.2 1035 345 2723 2721996..2723030 -
15 BSU03110 ycgH BG12006 unknown; similar to amino acid transporter Transport/binding proteins and lipoproteins1.2 1131 377 336.8 335687..336817 -
16 BSU05340 ydfA BG12148 unknown; similar to arsenical pump membrane protein Transport/binding proteins and lipoproteins1.2 1305 435 579.4 579433..580737 +
17 BSU29340 ytmN hisP BG12604 unknown; similar to amino-acid ABC transporter (ATP-binding protein) Transport/binding proteins and lipoproteins1.2 777 259 3004.2 3003388..3004164 -
18 BSU31480 yuxJ yugC BG10976 unknown; similar to multidrug-efflux transporter Transport/binding proteins and lipoproteins1.2 1176 392 P40760 3231.7 3231684..3232859 +
19 BSU35090 yvmA BG14120 unknown; similar to multidrug transporter Transport/binding proteins and lipoproteins1.2 1209 403 3604.6 3604553..3605761 +
20 BSU39930 yxaM BG11115 unknown; similar to antibiotic resistance protein Transport/binding proteins and lipoproteins1.2 1197 399 P42112 4100.2 4100186..4101382 +

Total number of rows: 8200

Table truncated, full table size 1071 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL7146_BACLIB384.pdf.gz 178.7 Kb (ftp)(http) PDF
GPL7146_Layout_spotted_oligo_array_Bsub_9.2k.txt.gz 274.4 Kb (ftp)(http) TXT

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