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Platform GPL7693 Query DataSets for GPL7693
Status Public on Jan 15, 2009
Title Conway Institute Candida parapsilosis 5834 v1.0
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Candida parapsilosis
Manufacturer Agilent
Manufacture protocol Oligonucleotides were designed from an in-house annotation of the C.parapsilosis genome sequence (http://www.sanger.ac.uk/sequencing/Candida/parapsilosis/) using eArray from Agilent Technology. Each of 5834 open reading frames is represented by two oligonucleotides probes. Mitochondrial genes are indicated by the prefix "cpmt". Controls from Arabidopsis thaliana were included. The probes were used to generate custom microarrays in a 4x44 K format with a randomized layout.
Support glass
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Description design no 015742
 
Contributor(s) Butler G, Guida A
Submission date Nov 24, 2008
Last update date Jan 15, 2009
Contact name Geraldine Butler
E-mail(s) geraldine.butler@ucd.ie
Organization name University Colege Dublin Conway Institute
Department School of Biomolecular and Biomedical Science
Lab Butler lab
Street address Belfield
City Dublin
ZIP/Postal code D4
Country Ireland
 
Samples (6) GSM344850, GSM344851, GSM344852, GSM344853, GSM344854, GSM344855
Series (2)
GSE13722 Transcriptional response of Candida parapsilosis in low oxygen (hypoxic) conditions in SD media
GSE13832 Hypoxia and biofilms in Candida parapsilosis

Data table header descriptions
ID Reference ID
Probe_ID Identifier of each probe spotted on the array from Agilent
Cpar_ID Gene ID from in-house annotation (cpar)
Cpag_ID Gene ID from annotation by Broad Institute (http://www.broad.mit.edu/annotation/fgi/). If a CPAG annotation is not available, the cpar annotation is given.
ORF Locus tag assigned by the Broad Institute
SEQUENCE Probe sequence information
SPOT_ID

Data table
ID Probe_ID Cpar_ID Cpag_ID ORF SEQUENCE SPOT_ID
1163152152 CUST_1_PI216681199 cpar2377 CPAG_01943 CPAG_01943 GAAAAAATCGCCTTCTGATATCTGATCCCATACTAGCTCCTACTAAATCAATGCACGATG
1153200200 CUST_1_PI216681199 cpar2377 CPAG_01943 CPAG_01943 GAAAAAATCGCCTTCTGATATCTGATCCCATACTAGCTCCTACTAAATCAATGCACGATG
1106179179 CUST_1_PI219554652 cpara5839_part cpara5839_part CCAACCATTGAGAACATTCAAGGTAAGAACATCCGTAAAAAAGTTTTGCAAAGACTGCTA cpara5839_part
118102102 CUST_1_PI219554652 cpara5839_part cpara5839_part CCAACCATTGAGAACATTCAAGGTAAGAACATCCGTAAAAAAGTTTTGCAAAGACTGCTA cpara5839_part
1132218218 CUST_1_PI219554996 cpmt19 cpmt19 ATTATTATACTTTGTAGCTACTTATTTATTACCTAATATTCTTCGTTTATTAATTGCTCG cpmt19
1130107107 CUST_1_PI219554996 cpmt19 cpmt19 ATTATTATACTTTGTAGCTACTTATTTATTACCTAATATTCTTCGTTTATTAATTGCTCG cpmt19
179104104 CUST_1_PI219555038 Athaliana_control Athaliana_control TCCAGTTTAAATACTTTCTCAAGGACCCTGTCAAATACGACGTCAAGTACCAGGCAAGCG --Athaliana_control
182179179 CUST_1_PI219555038 Athaliana_control Athaliana_control TCCAGTTTAAATACTTTCTCAAGGACCCTGTCAAATACGACGTCAAGTACCAGGCAAGCG --Athaliana_control
164163163 CUST_1_PI219967568 CpSpa2_Partial CpSpa2_Partial GAAAAGGCGTTGGGAGAAATGAATTGCGTTTTATGTGATTTAATCTCAACTTCGAAACTT CpSpa2_Partial
1140227227 CUST_1_PI219967568 CpSpa2_Partial CpSpa2_Partial GAAAAGGCGTTGGGAGAAATGAATTGCGTTTTATGTGATTTAATCTCAACTTCGAAACTT CpSpa2_Partial
1121233233 CUST_10_PI216681199 cpar2374 CPAG_01940 CPAG_01940 AATTCGAGAATGTGAGAATAATCAAGTTCAAATTACCTGCAGAGCACAGACTCCCTGAAT
1752727 CUST_10_PI216681199 cpar2374 CPAG_01940 CPAG_01940 AATTCGAGAATGTGAGAATAATCAAGTTCAAATTACCTGCAGAGCACAGACTCCCTGAAT
1141111111 CUST_10_PI219554652 cpara5834_part cpara5834_part TGGAAGCAACAAGACCGATTACATATTCCTGCAAAGAAAAGATACAAGTAAGTCGTTGGA cpara5834_part
1177777 CUST_10_PI219554652 cpara5834_part cpara5834_part TGGAAGCAACAAGACCGATTACATATTCCTGCAAAGAAAAGATACAAGTAAGTCGTTGGA cpara5834_part
1105201201 CUST_10_PI219554996 cpmt15 cpmt15 TGTTGCTGAAACAGCTAGACCTCCTATGGATGAAGTTGAAGCTGAATCTGAATTAGTTTC cpmt15
1259393 CUST_10_PI219554996 cpmt15 cpmt15 TGTTGCTGAAACAGCTAGACCTCCTATGGATGAAGTTGAAGCTGAATCTGAATTAGTTTC cpmt15
125152152 CUST_10_PI219967568 CpMTLa1 CpMTLa1 AGATGTGGCCTGAGTCCGTTGTAAATTCGAGTGTGTGTATGTCTTTTATATATGTTAATT CpMTLa1
19011 CUST_10_PI219967568 CpMTLa1 CpMTLa1 AGATGTGGCCTGAGTCCGTTGTAAATTCGAGTGTGTGTATGTCTTTTATATATGTTAATT CpMTLa1
11632727 CUST_100_PI216681199 cpar4529 CPAG_00872 CPAG_00872 TGGGTATCAGGACAAGAAAGGGAATTGGCTGTTGCAAGATTGGCATTGTATGCAGCAACT
136868 CUST_100_PI216681199 cpar4529 CPAG_00872 CPAG_00872 TGGGTATCAGGACAAGAAAGGGAATTGGCTGTTGCAAGATTGGCATTGTATGCAGCAACT

Total number of rows: 23456

Table truncated, full table size 2845 Kbytes.




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