|
| Status |
Public on Jan 15, 2009 |
| Title |
Transcriptional response of Candida parapsilosis in low oxygen (hypoxic) conditions in SD media |
| Organism |
Candida parapsilosis |
| Experiment type |
Expression profiling by array
|
| Summary |
Whole genome microarray was used to compare the transcriptional profile of C. parapsilosis growing in normoxic (21% oxygen) and hypoxic (1% oxygen) conditions.
|
| |
|
| Overall design |
RNA was isolated from cells grown in SD media at 37°C for 3 h in atmosphere oxygen of 1% oxygen, and labeled with Cy5 or Cy3. Six independent biological replicates were compared. 4 out of 6 hypoxic samples were labeled with Cy5, and 2 were labeled with Cy3.
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| |
|
| Contributor(s) |
Ding C, Butler G, Guida A |
| Citation(s) |
19151323 |
| |
| Submission date |
Nov 24, 2008 |
| Last update date |
Mar 20, 2012 |
| Contact name |
Geraldine Butler |
| E-mail(s) |
geraldine.butler@ucd.ie
|
| Organization name |
University Colege Dublin Conway Institute
|
| Department |
School of Biomolecular and Biomedical Science
|
| Lab |
Butler lab
|
| Street address |
Belfield
|
| City |
Dublin |
| ZIP/Postal code |
D4 |
| Country |
Ireland |
| |
|
| Platforms (1) |
| GPL7693 |
Conway Institute Candida parapsilosis 5834 v1.0 |
|
| Samples (6)
|
| GSM344850 |
Candida_parapsilosis_Normoxia_Vs_Hypoxia_rep1 |
| GSM344851 |
Candida_parapsilosis_Normoxia_Vs_Hypoxia_rep2 |
| GSM344852 |
Candida_parapsilosis_Normoxia_Vs_Hypoxia_rep3 |
| GSM344853 |
Candida_parapsilosis_Normoxia_Vs_Hypoxia_rep4 |
| GSM344854 |
Candida_parapsilosis_Normoxia_Vs_Hypoxia_rep5 |
| GSM344855 |
Candida_parapsilosis_Normoxia_Vs_Hypoxia_rep6 |
|
| This SubSeries is part of SuperSeries: |
| GSE13832 |
Hypoxia and biofilms in Candida parapsilosis |
|
| Relations |
| BioProject |
PRJNA114645 |
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