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Platform GPL7699 Query DataSets for GPL7699
Status Public on Dec 04, 2008
Title NimbleGen 385k S. cerevisiae 32bp tiling array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Saccharomyces cerevisiae
Manufacturer Roche NimbleGen
Manufacture protocol Singh-Gasson S, Green RD, Yue Y, Nelson C, Blattner F, Sussman MR,Cerrina F. Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array. Nat Biotechnol. 1999 Oct;17(10):974-8. PMID: 10504697
Catalog number C4214-00-01
Support glass
Coating aminosilane
 
Description S. cerevisiae whole-genome tiling arrays covering entire genome at 32bp resolution with 50bp probes. 385,000 probes total.
 
Web link http://www.nimblegen.com/products/chip/whole_genome.html
Citation(s) 10504697
Submission date Nov 25, 2008
Last update date Dec 04, 2008
Contact name Jason D Lieb
E-mail(s) jlieb@bio.unc.edu
Phone 919-843-3228
URL http://www.bio.unc.edu/faculty/lieb/labpages/default.shtml
Organization name University of North Carolina at Chapel Hill
Department Biology
Lab Jason Lieb
Street address 203 Fordham Hall
City Chapel Hill
State/province NC
ZIP/Postal code 27599
Country USA
 
Samples (19) GSM345371, GSM345403, GSM345414, GSM345415, GSM345416, GSM345417 
Series (5)
GSE12349 A library of yeast transcription factor motifs
GSE13751 DIP-chip from Cbf1, Leu3, Pho2, Pho4, Rap1, Rox1, and Swi5
GSE31872 Comparative Genomic Hybridization of S. cerevisiae industrial and laboratory strains

Data table header descriptions
ID
CHROMOSOME Chromosome containing the probe sequence
RANGE_START Start coordinate for the probe
RANGE_END Stop coordinate for the probe
RANGE_STRAND Strand probe was designed to
PROBE_CLASS Classification of probe (experimental = genomic DNA)
SEQUENCE DNA sequence of probe
GENOME RELEASE Genome build used to design probes: S. cerevisiae 2006-07-18 assembly

Data table
ID CHROMOSOME RANGE_START RANGE_END RANGE_STRAND PROBE_CLASS SEQUENCE GENOME RELEASE
seq_id=CHR10;probe_id=CHR100P000658244;count=1 CHR10 658245 658294 + experimental CGAGTGGTCTCGCCACTATATTGTTGTAATCCAGTGGCTTCGGCCTCATT 2006-07-18
seq_id=CHR11;probe_id=CHR100P000233992;count=1 CHR11 233993 234042 + experimental TAAAATCAAATTTTGATTTACATCAGGCTCCACAGGACAGGGAAATCTAT 2006-07-18
seq_id=CHR7;probe_id=CHR700P000027798;count=1 CHR7 27799 27848 + experimental TAAAAACAAAGCATTATAAGTAAACTCTCACACATGCTAACTTCTGTTGG 2006-07-18
seq_id=CHR13;probe_id=CHR100P000174587;count=1 CHR13 174588 174637 + experimental TCATAAAAACATTCCCCTTGGATAATAAGGGGATAAAGCATCCCACGGTT 2006-07-18
seq_id=CHR3;probe_id=CHR300P000004288;count=1 CHR3 4289 4338 + experimental CATATAAGTTAGATCGTAATTCACTACGTCAACATATCCCACGATAAAAA 2006-07-18
seq_id=CHR13;probe_id=CHR100P000412302;count=1 CHR13 412303 412352 + experimental TAATTTTTCATAGTTAACCCATTGATGATACTTATTAAAATATGTAATCA 2006-07-18
seq_id=CHR16;probe_id=CHR100P000174214;count=1 CHR16 174215 174264 + experimental GGTCTTCGTTGTCAGAATCAAGGGTATTAACAAGATTCCACCTAAGCCAA 2006-07-18
seq_id=CHR10;probe_id=CHR100P000329990;count=1 CHR10 329991 330040 + experimental TGTAAAAGCTTACAAAAAAGAGTTTGCGAAAAATTATAAATAAAAAGTAG 2006-07-18
seq_id=CHR13;probe_id=CHR100P000680961;count=1 CHR13 680962 681011 + experimental GCAGATTTAGTAAGTTTCTTTCTTCATGTATATCATGATTTTCAAAAATT 2006-07-18
seq_id=CHR2;probe_id=CHR200P000512532;count=1 CHR2 512533 512582 + experimental AAACAATTATGTACGATAGAAACATGGACCACTCAATTCAAAAAGCGCTA 2006-07-18
seq_id=CHR15;probe_id=CHR100P000061234;count=1 CHR15 61235 61284 + experimental TACCCGACCTTTTTGACGGGTAATATTACTCTAAACGATTTAACTAAACA 2006-07-18
seq_id=CHR12;probe_id=CHR100P000865292;count=1 CHR12 865293 865342 + experimental CAAAAGATTCTTTTCAAAAACGAATACGTTAATTTAGGATTAAATGACGA 2006-07-18
seq_id=CHR12;probe_id=CHR100P000912369;count=1 CHR12 912370 912419 + experimental TTTTCTATCTTTTAACTAATTAACATATAACTAGTTCCAATTTGCTAACC 2006-07-18
seq_id=CHR7;probe_id=CHR700P000685050;count=1 CHR7 685051 685100 + experimental TAAATTTTGTGCTTTTCTACAATCAATTACTGCGGATATAACATTACCAG 2006-07-18
seq_id=CHR14;probe_id=CHR100P000607305;count=1 CHR14 607306 607355 + experimental AAATATCGCATGCTGGTGATGTTTCCACAACACTGGGCGTCATCAAGGAA 2006-07-18
seq_id=CHR5;probe_id=CHR500P000295905;count=1 CHR5 295906 295955 + experimental GTAGTTAGAAAATGTTTTTTGGAACAAAATCTTAAGCTAGTTACTGCATT 2006-07-18
seq_id=CHR15;probe_id=CHR100P000887413;count=1 CHR15 887414 887463 + experimental GAAAATCGAACAGTGTAAACATCCATTACATGAGCTGATAATACAGTATC 2006-07-18
seq_id=CHR10;probe_id=CHR100P000306266;count=1 CHR10 306267 306316 + experimental TTATACCAATTGTGAAACCTTATGTGTATAATGAAGAGACTGCTTCAGAA 2006-07-18
seq_id=CHR11;probe_id=CHR100P000648485;count=1 CHR11 648486 648535 + experimental TTCTTTCAGCTTTCACGAAACTTCTACAGCCTCCACCTCCGTTCAAATAT 2006-07-18
seq_id=CHR10;probe_id=CHR100P000097577;count=1 CHR10 97578 97627 + experimental TTCCCTTTGGGCAAAATACGATACAGCCTTCCAAGGTCGGGCAAGAAAGT 2006-07-18

Total number of rows: 378684

Table truncated, full table size 52826 Kbytes.




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Supplementary file Size Download File type/resource
GPL7699.ndf.gz 16.5 Mb (ftp)(http) NDF
GPL7699.pos.gz 2.9 Mb (ftp)(http) POS

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