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Sample GSM787754 Query DataSets for GSM787754
Status Public on Sep 15, 2011
Title CGH YJS329_vs_BYZ1
Sample type genomic
 
Channel 1
Source name YJS329
Organism Saccharomyces cerevisiae
Characteristics strain: YJS329 (CCTCC M 2011275)
application: bioethanol strain
Growth protocol Growth in YPD medium (1g/L yeast extract, 2g/L peptone, 2g/L glucose, pH of 5.5).
Extracted molecule genomic DNA
Extraction protocol Total genomic DNA from yeast cells was isolated with the OMEGA Yeast DNA kit.
Label Cy3
Label protocol NimbleGen amplification and labeling
 
Channel 2
Source name BYZ1
Organism Saccharomyces cerevisiae
Characteristics strain: BYZ1 (MATa/MATα his3Δ1/his3Δ1 leu2Δ0/leu2Δ0 lys2Δ0/+ met15Δ0/+ ura3Δ0/ura3Δ0)
application: laboratory strain (S288c background)
Extracted molecule genomic DNA
Extraction protocol Total genomic DNA from yeast cells was isolated with the OMEGA Yeast DNA kit.
Label Cy5
Label protocol NimbleGen amplification and labeling
 
 
Hybridization protocol Competitively hybed ~10ug channel 1 and 2 DNA on NimbleGen 385k whole genome arrays using Maui SL mixers in Maui hybridization chamber. Washed as per NimbleGen hybridization protocol.
Scan protocol Axon GenePix 4000B microarray scanner
Data processing Raw data were extracted as pair files by NimbleScan software. Log2-ratio data were calculated and normalized by spatial correction and qspline fit normalization.
 
Submission date Aug 30, 2011
Last update date Jul 27, 2012
Contact name Daoqiong Zheng
E-mail(s) zhengdaoqiong@163.com
Phone 86 571 88206636
Organization name College of Life Sciences, Zhejiang University
Department Institute of Microbiology
Street address 866 Yuhangtang Road
City Hangzhou
State/province Zhejiang
ZIP/Postal code 310058
Country China
 
Platform ID GPL7699
Series (1)
GSE31872 Comparative Genomic Hybridization of S. cerevisiae industrial and laboratory strains

Data table header descriptions
ID_REF
VALUE log2 ratio of YJS329/BYZ1

Data table
ID_REF VALUE
seq_id=CHR1;probe_id=CHR100P000123281;count=1 0.21124
seq_id=CHR1;probe_id=CHR100P000124753;count=1 -0.07933
seq_id=CHR1;probe_id=CHR100P000001996;count=1 -0.03540
seq_id=CHR1;probe_id=CHR100P000011261;count=1 0.33086
seq_id=CHR1;probe_id=CHR100P000130876;count=1 0.07489
seq_id=CHR1;probe_id=CHR100P000056688;count=1 0.14057
seq_id=CHR1;probe_id=CHR100P000162897;count=1 -0.14986
seq_id=CHR1;probe_id=CHR100P000137475;count=1 0.18821
seq_id=CHR1;probe_id=CHR100P000065072;count=1 0.02061
seq_id=CHR1;probe_id=CHR100P000012733;count=1 0.68823
seq_id=CHR1;probe_id=CHR100P000206347;count=1 0.46142
seq_id=CHR1;probe_id=CHR100P000098462;count=1 -0.00257
seq_id=CHR1;probe_id=CHR100P000139716;count=1 0.33414
seq_id=CHR1;probe_id=CHR100P000161361;count=1 -0.18176
seq_id=CHR1;probe_id=CHR100P000020447;count=1 -0.24934
seq_id=CHR1;probe_id=CHR100P000005358;count=1 -0.15607
seq_id=CHR1;probe_id=CHR100P000189988;count=1 0.14580
seq_id=CHR1;probe_id=CHR100P000207435;count=1 -0.01767
seq_id=CHR1;probe_id=CHR100P000212203;count=1 0.04911
seq_id=CHR1;probe_id=CHR100P000210763;count=1 -0.25729

Total number of rows: 378684

Table truncated, full table size 20296 Kbytes.




Supplementary file Size Download File type/resource
GSM787754_BYZ1_635.pair.gz 6.8 Mb (ftp)(http) PAIR
GSM787754_YJS329_532.pair.gz 6.8 Mb (ftp)(http) PAIR
Processed data included within Sample table
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