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Platform GPL7788 Query DataSets for GPL7788
Status Public on Jan 13, 2009
Title Agilent_Dm_4.3_612_tiling
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Drosophila melanogaster
Manufacturer Agilent Technologies
Manufacture protocol Agilent Technologies
Catalog number AMADID# 014761
Support glass
Coating unknown
 
Description CGH resolution tiling array for modENCODE. Average probe spacing of 612 bp for Drosophila genome (4.3).
 
Web link http://www.modencode.org
Contributor(s) MacAlpine DM
Submission date Dec 11, 2008
Last update date Jan 13, 2009
Contact name David M MacAlpine
E-mail(s) david.macalpine@duke.edu
Phone 919 681 6077
Organization name Duke University Medical Center
Department Pharmacology and Cancer Biology
Street address Box 3813 DUMC
City Durham
State/province NC
ZIP/Postal code 27714
Country USA
 
Samples (5) GSM432737, GSM432738, GSM432742, GSM523548, GSM523549
Series (3)
GSE17289 CGH Salivary Gland - OregonR
GSE17291 CGH Follicle OregonR-Orr-Weaver
GSE20932 Preferential re-replication of Drosophila heterochromatin

Data table header descriptions
ID
FEATURE Unique local identifier for probe sequence
CHROMOSOME Chromosome
GB_RANGE RefSeq assembly [start..end]
START Genomic coordinate for start of probe sequence
END Genomic coordinate for end of probe sequence (+1 nt)
SEQUENCE Oligo sequence
GENOME_SOURCE Genome source from which probes were designed
SPOT_ID

Data table
ID FEATURE CHROMOSOME GB_RANGE START END SEQUENCE GENOME_SOURCE SPOT_ID
1 DmCGHBrightCorner AAAGACAAAGGAAATGCCGACGAGATTGAGAATTGAAATTTGTTTATAAACTGTGGAAGG agilent_control control
2 DarkCorner GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG agilent_control control
3 DarkCorner GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG agilent_control control
4 DM_DMELG_05966477 Chr3R AE014297.2[15208671..15208716] 15208671 15208717 CCGACTGACTACTAAACTAAAAGGAGGCACAACACCAGCCAGTGCT flybase|dmel4.3
5 DM_DMELG_02992761 Chr2R AE013599.3[6238241..6238291] 6238241 6238292 ATCTTCGTTCAAATTTAGTTTAGGCAGCGGTTTGTTGTGTCATTAAAGCGG flybase|dmel4.3
6 DM_DMELG_04027412 Chr2R AE013599.3[16584751..16584796] 16584751 16584797 GTTCTGATCGATTGTGTTGCATAATTCTGCAAATTGTTCACCATGC flybase|dmel4.3
7 DM_DMELG_02289455 Chr4 AE014135.2[486761..486813] 486761 486814 ATGTCTATGCATGTCTCGAGCGAACTCCTGTACAAACTTCTGCAATATGTCTT flybase|dmel4.3
8 DM_DMELG_01833231 Chr2L AE014134.4[18332301..18332357] 18332301 18332358 CGTTGCAGCCTCTTGGACTAGTTTATGTGGGGCGTTACATAAATCTCTGAATAATAG flybase|dmel4.3
9 DM_DMELG_02275669 Chr4 AE014135.2[348901..348960] 348901 348961 CAAGACAGAGTACCTGAGGATTTTTGCCGAAATAGCACGAACATTTAAATTTGAAAAAAG flybase|dmel4.3
10 DM_DMELG_02856512 Chr2R AE013599.3[4875751..4875799] 4875751 4875800 GAGCGTTGAGTGGCAAAATGTCTTCGGTTTCAGCTTGAGATTAAATTCT flybase|dmel4.3
11 DM_DMELG_07123392 Chr3R AE014297.2[26777821..26777875] 26777821 26777876 CTGTTTGTTCTGCTCACAGTTTTTCTAGTCGAAAGCATAACTCTGCACTCAAGTG flybase|dmel4.3
12 DM_DMELG_02632358 Chr2R AE013599.3[2634211..2634263] 2634211 2634264 TGACAAGGATGTGACACTAAAGGTCGTCCTGGCAACAATGAAATAATTACAAG flybase|dmel4.3
13 DM_DMELG_04560373 Chr3R AE014297.2[1147631..1147677] 1147631 1147678 TCTGCCGGATTTTCGAAACTGGTTTGGATCTACATAGATAGGTTGGG flybase|dmel4.3
14 DM_DMELG_09785407 Chr3L AE014296.3[3268641..3268695] 3268641 3268696 ATATAGTGAAACGTCTTTCAAAAAGATTCCTTTGAGTGCATCACGATGTGGCTTT flybase|dmel4.3
15 DM_DMELG_10262432 Chr3L AE014296.3[8038891..8038950] 8038891 8038951 GTTAACATAAAGGCGTTTTTCTGCAGAGTCATAAACTCCGAAACTGTATACATTTTCGGG flybase|dmel4.3
16 DM_DMELG_03574018 Chr2R AE013599.3[12050811..12050855] 12050811 12050856 TCAATTCCTTCCTAATGATCGCCAAGGGTTCGTGCGAACCACCTC flybase|dmel4.3
17 DM_DMELG_02094367 Chr2L AE014134.4[20943661..20943707] 20943661 20943708 ACTGCATTTTCAAGCGACACTCATCAATCTCTAAGCGGTCCAAAATT flybase|dmel4.3
18 DM_DMELG_09932820 Chr3L AE014296.3[4742771..4742815] 4742771 4742816 CTTGATGTGTCTGCCAGTTACCTGAGAAACCGGAGTTTGCTGACT flybase|dmel4.3
19 DM_DMELG_01554752 Chr2L AE014134.4[15547511..15547564] 15547511 15547565 AGGGTGGTGTCAAACTAATGGCAGTCTATGACAGGGATCTGATTTATTATGCAC flybase|dmel4.3
20 DM_DMELG_00383738 Chr2L AE014134.4[3837371..3837417] 3837371 3837418 GAAGTCCAGCTTTTCCATTAATTCCATTCTACCCGAGACTGTGGAGC flybase|dmel4.3

Total number of rows: 184672

Table truncated, full table size 26307 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL7788_25147611.ndf.gz 6.4 Mb (ftp)(http) NDF
GPL7788_25147611.pos.gz 2.9 Mb (ftp)(http) POS

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