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Platform GPL8022 Query DataSets for GPL8022
Status Public on Mar 30, 2009
Title Phanerochaete chrysosporium RP-78 microarrays
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Phanerochaete chrysosporium RP-78
Manufacturer NimbleGen Systems Inc.
Manufacture protocol Proprietary maskless array in situ oligonucleotide synthesis. See http://www.nimblegen.com/
 
Description The .ndf file is linked below as a supplementary file.
 
Web link http://genome.jgi-psf.org/Phchr1/Phchr1.info.html
Contributor(s) Cullen D
Submission date Jan 02, 2009
Last update date Mar 30, 2009
Contact name Dan Cullen
E-mail(s) dcullen@wisc.edu
Phone 608-231-9468
Organization name UW/FPL
Street address One Gifford Pinchot Dr
City Madison
State/province WI
ZIP/Postal code 53726
Country USA
 
Samples (24) GSM368081, GSM368082, GSM368083, GSM368084, GSM368085, GSM368086 
Series (5)
GSE14734 Cellulose-induced regulation of Phanaerochaete chrysosporium genes
GSE14735 Nutrient limitation-induced regulation of Phanaerochaete chrysosporium genes
GSE14736 Cellulose-induced and Nutrient limitation-induced regulation of Phanaerochaete chrysosporium genes

Data table header descriptions
ID SeqID_BLOCK
SEQ_ID
InterPro Hits Top InterPro domains hit
Genome position Scaffold and coordinates on JGI assembly v2.0
SPOT_ID
Protein ID Joint Genome Institute Protein Id

Data table
ID SEQ_ID InterPro Hits Genome position SPOT_ID Protein ID
10000_fgenesh1_pm_C_sc_2000043_BLOCK1 10000_fgenesh1_pm_C_sc_2000043 IPR005804::Fatty acid desaturase,IPR001522::Fatty acid desaturase, type 1,IPR001199::Cytochrome b5 scaffold_2:868124-869753 JGI ProteinID: 10000 10000
10000_fgenesh1_pm_C_sc_2000043_BLOCK2 10000_fgenesh1_pm_C_sc_2000043 IPR005804::Fatty acid desaturase,IPR001522::Fatty acid desaturase, type 1,IPR001199::Cytochrome b5 scaffold_2:868124-869753 JGI ProteinID: 10000 10000
10000_fgenesh1_pm_C_sc_2000043_BLOCK3 10000_fgenesh1_pm_C_sc_2000043 IPR005804::Fatty acid desaturase,IPR001522::Fatty acid desaturase, type 1,IPR001199::Cytochrome b5 scaffold_2:868124-869753 JGI ProteinID: 10000 10000
10009_fgenesh1_pm_C_sc_2000052_BLOCK1 10009_fgenesh1_pm_C_sc_2000052 IPR000866::Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen scaffold_2:958523-959521 JGI ProteinID: 10009 10009
10009_fgenesh1_pm_C_sc_2000052_BLOCK2 10009_fgenesh1_pm_C_sc_2000052 IPR000866::Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen scaffold_2:958523-959521 JGI ProteinID: 10009 10009
10009_fgenesh1_pm_C_sc_2000052_BLOCK3 10009_fgenesh1_pm_C_sc_2000052 IPR000866::Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen scaffold_2:958523-959521 JGI ProteinID: 10009 10009
1000_fgenesh1_pg_C_sc_1001000_BLOCK1 1000_fgenesh1_pg_C_sc_1001000 NONE FOUND scaffold_1:3194948-3196078 JGI ProteinID: 1000 1000
1000_fgenesh1_pg_C_sc_1001000_BLOCK2 1000_fgenesh1_pg_C_sc_1001000 NONE FOUND scaffold_1:3194948-3196078 JGI ProteinID: 1000 1000
1000_fgenesh1_pg_C_sc_1001000_BLOCK3 1000_fgenesh1_pg_C_sc_1001000 NONE FOUND scaffold_1:3194948-3196078 JGI ProteinID: 1000 1000
10011_fgenesh1_pm_C_sc_2000054_BLOCK1 10011_fgenesh1_pm_C_sc_2000054 IPR001030::Aconitate hydratase, N-terminal,IPR004430::3-isopropylmalate dehydratase large subunit,IPR000573::Aconitate hydratase, C-terminal,IPR004431::3-isopropylmalate dehydratase small subunit scaffold_2:977036-979749 JGI ProteinID: 10011 10011
10011_fgenesh1_pm_C_sc_2000054_BLOCK2 10011_fgenesh1_pm_C_sc_2000054 IPR001030::Aconitate hydratase, N-terminal,IPR004430::3-isopropylmalate dehydratase large subunit,IPR000573::Aconitate hydratase, C-terminal,IPR004431::3-isopropylmalate dehydratase small subunit scaffold_2:977036-979749 JGI ProteinID: 10011 10011
10011_fgenesh1_pm_C_sc_2000054_BLOCK3 10011_fgenesh1_pm_C_sc_2000054 IPR001030::Aconitate hydratase, N-terminal,IPR004430::3-isopropylmalate dehydratase large subunit,IPR000573::Aconitate hydratase, C-terminal,IPR004431::3-isopropylmalate dehydratase small subunit scaffold_2:977036-979749 JGI ProteinID: 10011 10011
10012_fgenesh1_pm_C_sc_2000055_BLOCK1 10012_fgenesh1_pm_C_sc_2000055 IPR007282::NOT2/NOT3/NOT5,IPR007207::Not CCR4-Not complex component, N-terminal scaffold_2:994083-996986 JGI ProteinID: 10012 10012
10012_fgenesh1_pm_C_sc_2000055_BLOCK2 10012_fgenesh1_pm_C_sc_2000055 IPR007282::NOT2/NOT3/NOT5,IPR007207::Not CCR4-Not complex component, N-terminal scaffold_2:994083-996986 JGI ProteinID: 10012 10012
10012_fgenesh1_pm_C_sc_2000055_BLOCK3 10012_fgenesh1_pm_C_sc_2000055 IPR007282::NOT2/NOT3/NOT5,IPR007207::Not CCR4-Not complex component, N-terminal scaffold_2:994083-996986 JGI ProteinID: 10012 10012
10015_fgenesh1_pm_C_sc_2000058_BLOCK1 10015_fgenesh1_pm_C_sc_2000058 IPR002155::Thiolase scaffold_2:1020717-1022156 JGI ProteinID: 10015 10015
10015_fgenesh1_pm_C_sc_2000058_BLOCK2 10015_fgenesh1_pm_C_sc_2000058 IPR002155::Thiolase scaffold_2:1020717-1022156 JGI ProteinID: 10015 10015
10015_fgenesh1_pm_C_sc_2000058_BLOCK3 10015_fgenesh1_pm_C_sc_2000058 IPR002155::Thiolase scaffold_2:1020717-1022156 JGI ProteinID: 10015 10015
10017_fgenesh1_pm_C_sc_2000060_BLOCK1 10017_fgenesh1_pm_C_sc_2000060 IPR006519::Ribosomal protein L11, bacterial,IPR000911::Ribosomal protein L11 scaffold_2:1097040-1097554 JGI ProteinID: 10017 10017
10017_fgenesh1_pm_C_sc_2000060_BLOCK2 10017_fgenesh1_pm_C_sc_2000060 IPR006519::Ribosomal protein L11, bacterial,IPR000911::Ribosomal protein L11 scaffold_2:1097040-1097554 JGI ProteinID: 10017 10017

Total number of rows: 30012

Table truncated, full table size 4654 Kbytes.




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Supplementary file Size Download File type/resource
GPL8022.ndf.gz 24.5 Mb (ftp)(http) NDF

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