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Series GSE14736 Query DataSets for GSE14736
Status Public on Mar 30, 2009
Title Cellulose-induced and Nutrient limitation-induced regulation of Phanaerochaete chrysosporium genes
Platform organism Phanerochaete chrysosporium RP-78
Sample organism Phanerodontia chrysosporium
Experiment type Expression profiling by array
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 19376920, 20400566
Submission date Feb 06, 2009
Last update date Dec 27, 2012
Contact name Dan Cullen
E-mail(s) dcullen@wisc.edu
Phone 608-231-9468
Organization name UW/FPL
Street address One Gifford Pinchot Dr
City Madison
State/province WI
ZIP/Postal code 53726
Country USA
 
Platforms (1)
GPL8022 Phanerochaete chrysosporium RP-78 microarrays
Samples (18)
GSM368081 Glucose repA 15322902_532
GSM368082 Glucose repB 15336002_532
GSM368083 Glucose repC 15336102_532
This SuperSeries is composed of the following SubSeries:
GSE14734 Cellulose-induced regulation of Phanaerochaete chrysosporium genes
GSE14735 Nutrient limitation-induced regulation of Phanaerochaete chrysosporium genes
Relations
BioProject PRJNA112195

This table lists the log2 and linear signals for all 10004 genes for all replicates. In addition, it contains ratios, genome location, and Interpro domains. header descriptions
SEQ_ID
10390502_532 C-limited RepA
10391002_532 C-limited RepB
10391702_532 C-limited RepC
Average C-limited
10480502_532 Replete RepA
10482902_532 Replete RepB
10492602_532 Replete RepC
Average Replete
10730002_532 N-limited RepA
10730202_532 N-limited RepB
11019602_532 N-limited RepC
Average N-limited
15322902_532 Glucose RepA
15336002_532 Glucose RepB
15336102_532 Glucose RepC
Average Glucose
15337202_532 Cellulose RepA
15340102_532 Cellulose RepB
15340302_532 Cellulose RepC
Average Cellulose
10390502_532 C-limited RepA - linear
10391002_532 C-limited RepB - linear
10391702_532 C-limited RepC - linear
Average C-limited linear
10480502_532 Replete RepA - linear
10482902_532 Replete RepB - linear
10492602_532 Replete RepC - linear
Average Replete linear
10730002_532 N-limited RepA - linear
10730202_532 N-limited RepB - linear
11019602_532 N-limited RepC - linear
Average N-limited linear
C-limited/Replete ratio
N-limited/Replete ratio
N-limited/C-limited ratio
15322902_532 Glucose RepA - linear
15336002_532 Glucose RepB - linear
15336102_532 Glucose RepC - linear
Average glucose linear
15337202_532 Cellulose RepA - linear
15340102_532 Cellulose RepB - linear
15340302_532 Cellulose RepC - linear
Average Cellulose linear
Cellulose/glucose ratio
Position
InterPro domains

Data table
SEQ_ID 10390502_532 C-limited RepA 10391002_532 C-limited RepB 10391702_532 C-limited RepC Average C-limited 10480502_532 Replete RepA 10482902_532 Replete RepB 10492602_532 Replete RepC Average Replete 10730002_532 N-limited RepA 10730202_532 N-limited RepB 11019602_532 N-limited RepC Average N-limited 15322902_532 Glucose RepA 15336002_532 Glucose RepB 15336102_532 Glucose RepC Average Glucose 15337202_532 Cellulose RepA 15340102_532 Cellulose RepB 15340302_532 Cellulose RepC Average Cellulose 10390502_532 C-limited RepA - linear 10391002_532 C-limited RepB - linear 10391702_532 C-limited RepC - linear Average C-limited linear 10480502_532 Replete RepA - linear 10482902_532 Replete RepB - linear 10492602_532 Replete RepC - linear Average Replete linear 10730002_532 N-limited RepA - linear 10730202_532 N-limited RepB - linear 11019602_532 N-limited RepC - linear Average N-limited linear C-limited/Replete ratio N-limited/Replete ratio N-limited/C-limited ratio 15322902_532 Glucose RepA - linear 15336002_532 Glucose RepB - linear 15336102_532 Glucose RepC - linear Average glucose linear 15337202_532 Cellulose RepA - linear 15340102_532 Cellulose RepB - linear 15340302_532 Cellulose RepC - linear Average Cellulose linear Cellulose/glucose ratio Position InterPro domains
10_fgenesh1_pg_C_sc_1000010 12.90 12.82 12.73 12.82 12.63 12.69 12.88 12.74 12.81 12.96 12.70 12.82 12.32 12.37 12.36 12.35 12.50 12.31 12.39 12.40 7632 7253 6801 7228 6335 6627 7562 6842 7178 7985 6637 7267 1.06 1.06 1.01 5109 5290 5249 5216 5784 5065 5349 5399 1.04 scaffold_1:37193-39644 NONE FOUND
100_fgenesh1_pg_C_sc_1000100 11.43 11.39 11.43 11.42 11.24 11.27 11.35 11.29 11.28 11.34 11.60 11.41 10.74 10.80 10.68 10.74 11.06 10.96 10.78 10.93 2765 2692 2763 2740 2417 2467 2615 2500 2491 2592 3105 2729 1.10 1.09 1.00 1712 1789 1644 1715 2138 1988 1754 1960 1.14 scaffold_1:312432-314257 NONE FOUND
1000_fgenesh1_pg_C_sc_1001000 13.26 13.22 12.93 13.14 13.21 13.11 13.11 13.14 13.30 12.90 13.37 13.19 13.45 13.22 13.41 13.36 13.06 13.10 13.04 13.07 9841 9563 7828 9077 9447 8830 8828 9035 10085 7626 10616 9442 1.00 1.05 1.04 11172 9556 10868 10532 8547 8809 8434 8597 0.82 scaffold_1:3194948-3196078 NONE FOUND
10000_fgenesh1_pm_C_sc_2000043 13.21 13.21 13.34 13.25 13.04 13.09 13.11 13.08 13.27 13.31 13.14 13.24 12.71 12.70 12.47 12.63 12.77 12.54 12.59 12.64 9456 9508 10359 9774 8426 8692 8853 8657 9862 10137 9053 9684 1.13 1.12 0.99 6683 6662 5684 6343 6998 5967 6169 6378 1.01 scaffold_2:868124-869753 IPR005804::Fatty acid desaturase,IPR001522::Fatty acid desaturase, type 1,IPR001199::Cytochrome b5
10009_fgenesh1_pm_C_sc_2000052 12.19 12.31 12.44 12.31 13.48 13.37 13.05 13.30 13.27 12.93 12.99 13.06 13.47 13.22 13.85 13.51 13.30 13.09 13.52 13.31 4670 5069 5543 5094 11440 10561 8496 10166 9872 7827 8113 8604 0.50 0.85 1.69 11349 9526 14741 11872 10105 8745 11750 10200 0.86 scaffold_2:958523-959521 IPR000866::Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1001_fgenesh1_pg_C_sc_1001001 13.02 12.94 12.82 12.93 12.61 12.73 12.83 12.72 12.80 12.95 12.78 12.84 12.58 12.57 12.47 12.54 12.71 12.53 12.48 12.57 8320 7842 7217 7793 6244 6798 7265 6769 7108 7893 7034 7345 1.15 1.09 0.94 6108 6087 5656 5950 6701 5914 5732 6116 1.03 scaffold_1:3196730-3198127 IPR001810::Cyclin-like F-box
10011_fgenesh1_pm_C_sc_2000054 13.19 13.11 12.99 13.10 13.59 13.88 13.43 13.63 13.18 13.02 13.34 13.18 13.59 13.23 13.94 13.59 12.95 12.88 13.15 13.00 9373 8871 8148 8798 12372 15029 11033 12811 9295 8304 10401 9333 0.69 0.73 1.06 12372 9602 15700 12558 7940 7531 9104 8192 0.65 scaffold_2:977036-979749 IPR001030::Aconitate hydratase, N-terminal,IPR004430::3-isopropylmalate dehydratase large subunit,IPR000573::Aconitate hydratase, C-terminal,IPR004431::3-isopropylmalate dehydratase small subunit
10012_fgenesh1_pm_C_sc_2000055 13.61 13.51 13.52 13.55 14.02 14.06 13.83 13.97 13.85 13.66 13.39 13.64 14.10 14.17 14.19 14.15 13.97 14.06 14.04 14.02 12480 11683 11780 11981 16558 17036 14558 16051 14790 12966 10770 12842 0.75 0.80 1.07 17511 18473 18636 18207 16056 17049 16836 16647 0.91 scaffold_2:994083-996986 IPR007282::NOT2/NOT3/NOT5,IPR007207::Not CCR4-Not complex component, N-terminal
10015_fgenesh1_pm_C_sc_2000058 13.31 13.20 13.22 13.24 13.86 14.07 13.70 13.88 13.44 13.31 13.35 13.36 14.21 13.96 14.46 14.21 13.59 13.74 14.06 13.80 10121 9430 9513 9688 14904 17252 13283 15146 11076 10131 10438 10548 0.64 0.70 1.09 18905 15945 22607 19152 12327 13692 17075 14364 0.75 scaffold_2:1020717-1022156 IPR002155::Thiolase
10017_fgenesh1_pm_C_sc_2000060 14.07 14.06 13.78 13.97 13.74 13.81 13.84 13.80 13.78 13.76 13.90 13.81 13.64 13.51 13.47 13.54 13.62 13.67 13.60 13.63 17251 17130 14028 16136 13682 14322 14711 14238 14030 13839 15236 14368 1.13 1.01 0.89 12730 11663 11308 11900 12592 13040 12385 12672 1.06 scaffold_2:1097040-1097554 IPR006519::Ribosomal protein L11, bacterial,IPR000911::Ribosomal protein L11
10019_fgenesh1_pm_C_sc_2000062 13.82 13.73 14.13 13.89 13.95 13.88 13.87 13.90 13.90 14.06 13.50 13.82 13.85 14.07 14.03 13.98 14.08 14.00 13.92 14.00 14474 13581 17940 15331 15787 15102 14922 15270 15299 17085 11577 14653 1.00 0.96 0.96 14777 17171 16753 16234 17312 16380 15513 16401 1.01 scaffold_2:1241231-1241764 IPR003807::Protein of unknown function DUF202
1002_fgenesh1_pg_C_sc_1001002 11.84 11.82 11.58 11.75 11.35 11.47 11.86 11.56 11.60 11.78 11.82 11.73 11.24 11.10 11.11 11.15 11.21 11.14 11.19 11.18 3661 3621 3060 3447 2614 2828 3729 3057 3108 3507 3622 3413 1.13 1.12 0.99 2424 2190 2217 2277 2364 2259 2335 2319 1.02 scaffold_1:3198494-3200601 IPR000719::Protein kinase,IPR002290::Serine/threonine protein kinase,IPR001245::Tyrosine protein kinase,IPR008271::Serine/threonine protein kinase, active site
10026_fgenesh1_pm_C_sc_2000069 13.59 13.55 13.58 13.57 13.48 13.44 13.50 13.47 13.55 13.52 13.28 13.45 13.14 13.29 13.18 13.21 13.35 13.35 13.25 13.32 12318 11995 12255 12189 11441 11089 11587 11372 11964 11710 9975 11216 1.07 0.99 0.92 9047 10042 9271 9453 10475 10431 9712 10206 1.08 scaffold_2:1430095-1431321 IPR010923::Translation factor, SUA5 type,IPR004388::Sua5/YciO/YrdC/YwlC,IPR005145::SUA5,IPR006070::SUA5/yciO/yrdC, N-terminal
10029_fgenesh1_pm_C_sc_2000072 12.90 12.91 13.01 12.94 12.76 12.69 12.79 12.75 13.08 13.03 13.05 13.05 12.39 12.62 12.48 12.50 12.61 12.62 12.49 12.57 7632 7712 8220 7855 6940 6586 7107 6878 8675 8361 8484 8507 1.14 1.24 1.08 5380 6312 5708 5800 6251 6275 5749 6092 1.05 scaffold_2:1472919-1475461 IPR004648::Tetrapeptide transporter, OPT1/isp4,IPR004813::Oligopeptide transporter OPT superfamily
1003_fgenesh1_pg_C_sc_1001003 13.57 13.54 13.53 13.55 13.37 13.27 13.44 13.36 13.56 13.61 13.51 13.56 13.02 13.18 13.08 13.09 13.37 13.23 13.15 13.25 12165 11939 11802 11969 10622 9872 11121 10538 12047 12469 11659 12058 1.14 1.14 1.01 8326 9250 8686 8754 10561 9622 9088 9757 1.11 scaffold_1:3201626-3203616 NONE FOUND
10037_fgenesh1_pm_C_sc_2000080 11.83 11.74 11.54 11.70 12.29 12.19 11.94 12.14 11.48 11.36 11.82 11.55 12.64 12.33 12.26 12.41 12.02 12.32 11.91 12.08 3631 3424 2976 3343 4996 4674 3933 4534 2859 2631 3620 3037 0.74 0.67 0.91 6361 5165 4905 5477 4162 5119 3840 4374 0.80 scaffold_2:1591077-1592205 NONE FOUND
10039_fgenesh1_pm_C_sc_2000082 11.92 11.80 11.84 11.85 11.55 11.61 11.67 11.61 11.64 11.80 11.71 11.72 11.10 11.20 11.20 11.17 11.28 11.27 11.08 11.21 3878 3577 3656 3704 2992 3121 3265 3126 3194 3569 3360 3374 1.18 1.08 0.91 2194 2347 2359 2300 2490 2463 2161 2372 1.03 scaffold_2:1642006-1643037 NONE FOUND
1004_fgenesh1_pg_C_sc_1001004 8.79 8.87 8.61 8.76 8.52 8.64 8.63 8.60 8.76 8.74 8.62 8.71 8.06 8.16 8.14 8.12 8.29 8.26 7.86 8.14 443 467 390 433 366 400 397 388 434 428 394 419 1.12 1.08 0.97 267 285 281 278 312 307 233 284 1.02 scaffold_1:3203886-3204344 NONE FOUND
10047_fgenesh1_pm_C_sc_2000090 12.75 13.07 12.82 12.88 14.24 14.19 13.95 14.13 13.53 13.28 13.65 13.49 13.98 13.60 13.97 13.85 13.42 13.71 13.77 13.64 6881 8591 7218 7563 19357 18733 15849 17980 11849 9979 12891 11573 0.42 0.64 1.53 16203 12410 16006 14873 10967 13430 13984 12794 0.86 scaffold_2:1785512-1787213 IPR002452::Alpha tubulin,IPR000217::Tubulin,IPR003008::Tubulin/FtsZ, GTPase,IPR008280::Tubulin/FtsZ, C-terminal
1005_fgenesh1_pg_C_sc_1001005 12.49 12.37 12.45 12.44 12.15 12.20 12.37 12.24 12.31 12.32 12.08 12.24 12.00 12.09 12.01 12.03 12.18 12.16 12.13 12.16 5754 5286 5593 5545 4538 4703 5296 4846 5077 5110 4344 4844 1.14 1.00 0.87 4095 4367 4111 4191 4649 4589 4477 4572 1.09 scaffold_1:3204831-3207414 NONE FOUND

Total number of rows: 10004

Table truncated, full table size 3327 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE14736_RAW.tar 135.8 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table
Raw data provided as supplementary file
Processed data provided as supplementary file
Processed data are available on Series record
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