GEO help: Mouse over screen elements for information.
Status
Public on Jul 01, 2009
Title
NSF Rice Oligonucleotide Array 45K One Chip Version
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Oryza sativa Manufacturer
The Institute for Genomic Research
Manufacture protocol
Visit http://www.ricearray.org
Description
GenePix Array List rice_45k.v4.feb1706.gal provided
Web link
http://www.ricearray.org Submission date
Feb 05, 2009
Last update date
Jul 01, 2009
Contact name
Hui-Hsien Chou
E-mail(s)
hhchou@iastate.edu Phone
515-294-9242
Organization name
Iowa State University
Department
Genetics, Development and Cell Biology
Lab
Complex Computation Lab
Street address
503 Science II
City
Ames
State/province
IA
ZIP/Postal code
50011
Country
USA
Samples (169)
GSM367552 , GSM367553 , GSM367554 , GSM367555 , GSM367556 , GSM367557
GSM367558 ,
GSM367559 ,
GSM367560 ,
GSM367561 ,
GSM367562 ,
GSM367563 ,
GSM367564 ,
GSM367565 ,
GSM367566 ,
GSM367567 ,
GSM367568 ,
GSM367569 ,
GSM367570 ,
GSM367571 ,
GSM367572 ,
GSM367573 ,
GSM367574 ,
GSM367575 ,
GSM367576 ,
GSM367577 ,
GSM367578 ,
GSM367579 ,
GSM367580 ,
GSM367581 ,
GSM367582 ,
GSM367583 ,
GSM367584 ,
GSM367585 ,
GSM367586 ,
GSM367587 ,
GSM367588 ,
GSM367589 ,
GSM367590 ,
GSM367591 ,
GSM367592 ,
GSM367593 ,
GSM367594 ,
GSM367595 ,
GSM367596 ,
GSM367597 ,
GSM367598 ,
GSM367599 ,
GSM367600 ,
GSM367601 ,
GSM367602 ,
GSM367603 ,
GSM367604 ,
GSM367605 ,
GSM367606 ,
GSM367607 ,
GSM367608 ,
GSM367609 ,
GSM367610 ,
GSM367611 ,
GSM367612 ,
GSM367613 ,
GSM367614 ,
GSM367615 ,
GSM367616 ,
GSM367617 ,
GSM367618 ,
GSM367619 ,
GSM367620 ,
GSM367621 ,
GSM367622 ,
GSM367623 ,
GSM367624 ,
GSM367625 ,
GSM367626 ,
GSM367627 ,
GSM367628 ,
GSM367629 ,
GSM367630 ,
GSM367631 ,
GSM367632 ,
GSM367633 ,
GSM367634 ,
GSM367635 ,
GSM367636 ,
GSM367637 ,
GSM367638 ,
GSM367639 ,
GSM367640 ,
GSM367641 ,
GSM367642 ,
GSM367643 ,
GSM367644 ,
GSM367645 ,
GSM367646 ,
GSM367647 ,
GSM367648 ,
GSM367649 ,
GSM367650 ,
GSM367651 ,
GSM367652 ,
GSM367653 ,
GSM367654 ,
GSM367655 ,
GSM367656 ,
GSM367657 ,
GSM367658 ,
GSM367659 ,
GSM367660 ,
GSM367661 ,
GSM367662 ,
GSM367663 ,
GSM367664 ,
GSM367665 ,
GSM367666 ,
GSM367667 ,
GSM367668 ,
GSM367669 ,
GSM367670 ,
GSM367671 ,
GSM367672 ,
GSM367673 ,
GSM367674 ,
GSM367675 ,
GSM367676 ,
GSM367677 ,
GSM367678 ,
GSM367679 ,
GSM367680 ,
GSM367681 ,
GSM367682 ,
GSM367683 ,
GSM367684 ,
GSM367685 ,
GSM367686 ,
GSM367687 ,
GSM367688 ,
GSM367689 ,
GSM367690 ,
GSM367691 ,
GSM367692 ,
GSM367693 ,
GSM367694 ,
GSM367695 ,
GSM367696 ,
GSM367697 ,
GSM367698 ,
GSM367699 ,
GSM367700 ,
GSM367701 ,
GSM367702 ,
GSM367703 ,
GSM367704 ,
GSM367705 ,
GSM367706 ,
GSM367707 ,
GSM367708 ,
GSM367709 ,
GSM367710 ,
GSM367711 ,
GSM367712 ,
GSM367713 ,
GSM367714 ,
GSM367715 ,
GSM367716 ,
GSM1219517 ,
GSM1219518 ,
GSM1219519 ,
GSM1219520 Series (2)
GSE14717 Direct calibration of PICKY-designed microarrays
GSE50454 Oryza sativa-Magnaporthe grisea interaction
Data table header descriptions ID Spot identifier for each feature.
BLOCK The block number for the feature.
COLUMN The column location within the block.
ROW The row location within the block.
NAME TIGR Rice Oligo ID.
MATCH TIGR Rice Annotation Project release 4, or flcDNA, or TIGR Plant Transcript Assembly Rice build 2 containing the oligo at 100% identity. The first 4 matching hits are listed.
FEATURE TIGR Rice Annotation Project release 4 Feature Name, if applicable.
FLCDNA full length cDNA match.
GB_LIST SPOT_ID GO Gene Ontology term.
ANTHERS Tissue classification of the ESTs.
CALLUS Tissue classification of the ESTs.
ENDOSPERM Tissue classification of the ESTs.
FLOWER Tissue classification of the ESTs.
IMMATURE Tissue classification of the ESTs.
LEAF Tissue classification of the ESTs.
MIXED Tissue classification of the ESTs.
PANICLE Tissue classification of the ESTs.
PHLOEM Tissue classification of the ESTs.
PISTIL Tissue classification of the ESTs.
ROOT Tissue classification of the ESTs.
SEED Tissue classification of the ESTs.
SEEDLING Tissue classification of the ESTs.
SHEATH Tissue classification of the ESTs.
SHOOT Tissue classification of the ESTs.
STEM Tissue classification of the ESTs.
SUSPENSION Tissue classification of the ESTs.
UNKNOWN Tissue classification of the ESTs.
WHOLE Tissue classification of the ESTs.
FSTS_IN_CDS FSTs inserted in a coding region of a gene model.
FSTS_IN_UTRS FSTs inserted in an un-translated region of a gene model.
ANNOTATION Provided by a blastx to UniRef90 of the match(es) listed in NAME.
Data table ID BLOCK COLUMN ROW NAME MATCH FEATURE FLCDNA GB_LIST SPOT_ID GO ANTHERS CALLUS ENDOSPERM FLOWER IMMATURE LEAF MIXED PANICLE PHLOEM PISTIL ROOT SEED SEEDLING SHEATH SHOOT STEM SUSPENSION UNKNOWN WHOLE FSTS_IN_CDS FSTS_IN_UTRS ANNOTATION 18659528
1
1
1
TR030072 LOC_Os01g02040.1
11971.m06845
AK101096
AK101096 N/A
0
0
0
0
0
2
2
2
0
0
0
0
0
0
4
0
0
0
0
N/A
N/A
Transposon protein, putative, CACTA, En/Spm sub-class, expressed
18686333
1
2
1
TR031593 LOC_Os01g24690.1,LOC_Os01g24690.2
11971.m08936,11971.m43007
AK120842,AK102699
AK120842 , AK102699 GO:0003723,GO:0003735,GO:0005622,GO:0006412,GO:0007046,GO:0009282,GO:0015934,GO:0003723,GO:0003735,GO:0005622,GO:0006412,GO:0007046,GO:0009282,GO:0015934
0
33
9
0
0
10
6
3
0
0
6
0
0
0
2
3
0
5
0
N/A
N/A
60S ribosomal protein L23A, putative, expressed
18706835
1
3
1
TR033113 LOC_Os01g49440.1
11971.m11130
AK111204
AK111204 N/A
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
N/A
N/A
Expressed protein
18668516
1
4
1
TR034633 LOC_Os01g68400.1
11971.m12943
N/A
LOC_Os01g68400.1
N/A
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
N/A
CL518004
Hypothetical protein
18670615
1
5
1
TR036151 LOC_Os02g15410.1
11972.m06784
N/A
LOC_Os02g15410.1
N/A
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
N/A
N/A
Hypothetical protein
18672808
1
6
1
TR037672 LOC_Os02g39720.4
11972.m33764
N/A
LOC_Os02g39720.4
GO:0000398,GO:0003723,GO:0005515,GO:0005634,GO:0005730,GO:0016607,GO:0035061
0
7
0
0
0
33
1
2
0
0
1
0
0
0
0
0
0
0
0
N/A
N/A
Splicing factor, putative, expressed
18674494
1
7
1
TR039193 LOC_Os03g01500.1
11973.m05698
N/A
LOC_Os03g01500.1
N/A
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
N/A
N/A
Hypothetical protein
18676252
1
8
1
TR040713 chr03:11372557
N/A
N/A
chr03:11372557
N/A
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
N/A
N/A
N/A
18678407
1
9
1
TR042232 LOC_Os03g44560.1
11973.m09495
AK070243,AK061238
AK070243 , AK061238 N/A
0
0
0
0
0
1
1
0
0
0
1
0
0
0
0
0
0
0
0
N/A
N/A
Expressed protein
18680143
1
10
1
TR043752 LOC_Os03g63680.1
11973.m11236
AK120043,AK102872,AK059849
AK120043 , AK102872 , AK059849 N/A
0
3
0
0
0
4
0
0
0
0
0
0
0
0
1
0
0
0
0
N/A
N/A
Expressed protein
18682334
1
11
1
TR045272 LOC_Os04g30130.1
11974.m08119
N/A
LOC_Os04g30130.1
N/A
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
N/A
N/A
Hypothetical protein
18684126
1
12
1
TR046790 LOC_Os04g50820.1
11974.m09979
AK070801
AK070801 GO:0006857,GO:0015198,GO:0016020
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
N/A
N/A
Oligopeptide transporter 4, putative, expressed
18685878
1
13
1
TR048312 LOC_Os07g12310.1
11977.m05684
N/A
LOC_Os07g12310.1
N/A
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
N/A
N/A
Hypothetical protein
18688094
1
14
1
TR049832 LOC_Os07g39360.1
11977.m08178
AK119464
AK119464 GO:0005351,GO:0005354,GO:0005355,GO:0005365,GO:0005403,GO:0005886,GO:0015144,GO:0015145,GO:0015148,GO:0015168,GO:0015575,GO:0015591,GO:0016020
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
N/A
N/A
Sorbitol transporter, putative, expressed
18690144
1
15
1
TR051352 LOC_Os08g10820.1
11978.m05213
N/A
LOC_Os08g10820.1
N/A
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
N/A
N/A
Hypothetical protein
18692411
1
16
1
TR052873 LOC_Os08g37390.1
11978.m07725
AK070025
AK070025 GO:0000074,GO:0000080,GO:0004693,GO:0005515,GO:0009744,GO:0016538
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
N/A
N/A
Cyclin, N-terminal domain containing protein, expressed
18694086
1
17
1
TR054392 LOC_Os10g20370.1
11980.m05058
N/A
LOC_Os10g20370.1
N/A
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
N/A
N/A
Hypothetical protein
18696546
1
18
1
TR055913 LOC_Os10g42920.1
11980.m07043
N/A
LOC_Os10g42920.1
N/A
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
N/A
N/A
Hypothetical protein
18698987
1
19
1
TR057433 LOC_Os06g22990.1
11976.m06952
N/A
LOC_Os06g22990.1
N/A
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
N/A
N/A
Hypothetical protein
18700892
1
20
1
TR058952 LOC_Os06g48880.1
11976.m09414
AK110868
AK110868 N/A
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
N/A
N/A
Expressed protein
43767 8321 Kbytes .Supplementary file Size Download File type/resource GPL8161_rice_45k.v4.feb1706.gal.gz
1.0 Mb
(ftp) (http) GAL
Less...
More...