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Platform GPL8463 Query DataSets for GPL8463
Status Public on Apr 25, 2009
Title Carnegie Xenopus Laevis 44K Microarray (60-mer Oligo)
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Xenopus laevis
Manufacturer Agilent
Manufacture protocol As descripted by Agilent manuals under Platform_web_link
Support glass
Coating aminosilane
 
Description Carnegie Xenopus laevis 44K Microarray contains 33206 60-mer oligonucleotides representing over 20,000 known and predicted Xenopus laevis genes.
 
Web link http://www.chem.agilent.com/scripts/generic.asp?lpage=11617&indcol=N&prodcol=Y
Submission date Apr 21, 2009
Last update date Apr 25, 2009
Contact name Donald Brown
E-mail(s) brown@ciwemb.edu
Organization name Carnegie Institution
Department Department of Embryology
Street address 3520 San Martin Dr
City Baltimore
State/province MD
ZIP/Postal code 21218
Country USA
 
Samples (16) GSM402482, GSM402483, GSM402484, GSM402485, GSM402486, GSM402487 
Series (2)
GSE16074 Thyroid Hormone (TH) Controls The Remodeling Of The Pancreas And The Liver, Part A
GSE16075 Thyroid Hormone (TH) Controls The Remodeling Of The Pancreas And The Liver

Data table header descriptions
ID Feature Number
SEQUENCE Sequence of oligonucleotide probe
ProbeName Probe Name
UNIGENE_ID Xenopus Unigene Seq ID / Genbank accesion
UNIGENE_CLU Xenopus Unigene Cluster/GenBank Accession
TAXONOMY Species Taxonomy
SYMBOL Gene Symbol
ALIAS Gene Aliases
GENE_DESCRIPTION Gene Annotation
PARENT_ACC Parent Sequence 'NT' search Accession
PARENT_DESCRIPTION Parent Sequence 'NT' search top best hit
Domain Domain
Biological_Process Biological Process
Cellular_Component Cellular Component
Molecular_Function Molecular Function
GB_ACC GenBank accession
SPOT_ID

Data table
ID SEQUENCE ProbeName UNIGENE_ID UNIGENE_CLU TAXONOMY SYMBOL ALIAS GENE_DESCRIPTION PARENT_ACC PARENT_DESCRIPTION Domain Biological_Process Cellular_Component Molecular_Function GB_ACC SPOT_ID
14 AGAATTATGAGATCTTCCAGGAAATGTTAGAAACAAACAAACGTCAGGCTTCCCCGGCCG bld78_13623 Xl#S13804949 Xl.8790 Transcribed locus, moderately similar to XP_001520022.1 PREDICTED: similar to chromosome 9 open reading frame 86, partial [Ornithorhynchus anatinus] NM_001113830.1 Xenopus tropicalis hypothetical protein LOC100135091 (LOC100135091), mRNA >gi|161611523|gb|BC155697.1| Xenopus tropicalis cDNA clone MGC:172802 IMAGE:7685233, complete cds ARF/SAR superfamily| Ras| Heat shock protein Hsp90| Protein of unknown function DUF605| APC basic| TraB pilus assembly| Protein of unknown function DUF1682| RNA polymerase I, subunit RPA34.5, fungi| Miro-like| Translation initiation factor eIF3 subunit| H protein folding|intracellular protein transport|nucleocytoplasmic transport|signal transduction|small GTPase mediated signal transduction|small GTPase mediated signal transduction|small GTPase mediated signal transduction|protein transport|Wnt receptor si intracellular|intracellular|chromosome|intracellular| unfolded protein binding|GTPase activity|protein binding|GTP binding|GTP binding|GTP binding|GTP binding|GTP binding|protein binding|microtubule binding|DNA binding|DNA topoisomerase type I activity|GTP binding| Unigene Xl.8790
15 CCGTTTTATATTAGTGATGCGCGGGTCAGGCTTTTGGCGACCCACATCTTTTTATAGAAC bld78_6819 Xl#S17003748 Xl.11502 Transcribed locus Unigene Xl.11502
16 TCATAAAATAAATATGGAACATCATTTCCGCCATTTGGGGAGGGAGCACAAGGGTGGAGG bld78_24668 Xl#S13772664 Xl.20142 Transcribed locus XM_415410.2 PREDICTED: Gallus gallus similar to RP11-100C15.2 (LOC417127), mRNA Calponin-like actin-binding| Protein of unknown function DUF1781| Unigene Xl.20142
17 TATTCACCGTCCGAGCACCACGCGCTGCTTGTGTTTTTATTCTTTACAAATACTACTGTG bld78_25650 Xl#S20966493 NM_001092666.1 8355 MGC83977 MGC83977 protein NM_001092666.1 Xenopus laevis MGC83977 protein (MGC83977), mRNA >gi|49257611|gb|BC074241.1| Xenopus laevis MGC83977 protein, mRNA (cDNA clone MGC:83977 IMAGE:6945416), complete cds Zinc finger, RING-type| Zinc finger, variant RING-type| protein binding|zinc ion binding|zinc ion binding| NM_001092666.1
18 GCCAAATGTTGTTCATGGGACCCCGAAATGCAGAATATCAATATACTAAAATAAGAAGAA bld78_12025 Xl#S22511922 BC087371.1 8355 LOC495985 hypothetical LOC495985 BC087371.1 Xenopus laevis hypothetical LOC495985, mRNA (cDNA clone MGC:99135 IMAGE:7205861), complete cds BC087371.1
19 TTTTACCTACCTAGTTCCTGGGAGCAAAGAGGAAGAGAACACTGAAAACCATTAAAACTT bld78_21185 Xl#S18077194 Xl.5047 Transcribed locus NM_001093195.1 Xenopus laevis MGC80050 protein (MGC80050), mRNA >gi|50414736|gb|BC077277.1| Xenopus laevis MGC80050 protein, mRNA (cDNA clone MGC:80050 IMAGE:4057016), complete cds Unigene Xl.5047
21 TAGTCGTATTTCGCCGTAGGGACCCAGGCTCATTTAAACACATATTTCGGTCTCACTAGA bld78_32176 Xl#S16999017 Xl.81708 Transcribed locus NM_001122796.1 Xenopus tropicalis CCCTC-binding factor (zinc finger protein) (ctcf), mRNA >gi|170284949|gb|BC161099.1| Xenopus tropicalis cDNA clone MGC:185076 IMAGE:7690853, complete cds Transcription initiation factor IIF, alpha subunit| Procyclic acidic repetitive| Peptidase A24A, N-terminal| Protein phosphatase 4 core regulatory subunit R2| Zinc finger, C2H2-like| positive regulation of transcription| nucleus|membrane|intracellular| DNA binding|transcription activator activity|zinc ion binding| Unigene Xl.81708
22 ATCTTAGATTCAACTGTGTTTGCTCCATGTCCTGGATCTGCTTCTTCTGCACATGCTCCT bld78_5134 Xl#S13653802 Xl.5337 Transcribed locus AC148967.2 Xenopus tropicalis clone ISB1-59L10, complete sequence Unigene Xl.5337
23 CTTTGCATAACAGAAACGAATGGTCTGACTAAAAGGCAAAGAGCACCAAAATTAAATGTT bld78_26522 Xl#S13638829 BC110741.1 8355 MGC130938 hypothetical protein MGC130938 BC110741.1 Xenopus laevis hypothetical protein MGC130938, mRNA (cDNA clone MGC:130938 IMAGE:7394050), complete cds BC110741.1
25 CACCATTCCATAATGTCATACATTTACTCAGAAGGGCATTATTGCAATGGAGAAACAGTA bld78_28372 Xl#S13737463 Xl.14986 Transcribed locus BC073049.1 Xenopus laevis hypothetical protein LOC443613, mRNA (cDNA clone IMAGE:5073785), partial cds Rad51, C-terminal| Unigene Xl.14986
26 GTCAGGAGACAAGAAGCAACTATTTCATGGGAAGAATTATGAACCCTAAGAAATAGTTTT bld78_31738 Xl#S21662440 NM_001093827.1 8355 MGC85345 MGC85345 protein NM_001093827.1 Xenopus laevis MGC85345 protein (MGC85345), mRNA >gi|51593677|gb|BC078523.1| Xenopus laevis MGC85345 protein, mRNA (cDNA clone MGC:85345 IMAGE:6876479), complete cds Protease inhibitor I4, serpin| serine-type endopeptidase inhibitor activity| NM_001093827.1
27 AACAACATCCCCCATGTCCATCAAATAACACTCATGGGGTCAATAAAAGACATTAATTTA bld78_32583 Xl#S21561503 NM_001093954.1 8355 MGC86218 MGC86218 protein NM_001093954.1 Xenopus laevis MGC86218 protein (MGC86218), mRNA >gi|51258827|gb|BC079764.1| Xenopus laevis MGC86218 protein, mRNA (cDNA clone MGC:86218 IMAGE:6957900), complete cds Catalytic domain of components of various dehydrogenase complexes| Biotin/lipoyl attachment| E3 binding| metabolic process|metabolic process| acyltransferase activity|protein binding|acyltransferase activity| NM_001093954.1
28 CAACCCAGACTTTTCAATGATCAAAATATGCTGCAGACTTTTTGAGTTCCCAGTAAGAAC bld78_28427 Xl#S24441919 NM_053883.2 10116 Dusp6 MGC93276 dual specificity phosphatase 6 BC093477.1 Xenopus laevis cDNA clone MGC:98540 IMAGE:7199090, complete cds Protein-tyrosine phosphatase, receptor/non-receptor type| Rhodanese-like| Protein-tyrosine phosphatase, dual specificity| Protein-tyrosine phosphatase, catalytic| protein amino acid dephosphorylation|protein amino acid dephosphorylation|protein amino acid dephosphorylation| protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity| NM_053883.2
29 GAACAAATCCGGTCAATCTTTAGTATCCCATTGTATATGGCAGTTATCTGTTTGACCAGT bld78_4827 Xl#S35790439 NM_001093382.1 8355 MGC83493 MGC83493 protein NM_001093382.1
30 GAGGGTATAATTCAAAACTGAAGGAAAAGGTCTGAAGTGCAGGGATAAATCAGGGATGGC bld78_20351 Xl#S14216322 Xl.5738 Transcribed locus BX294109.5 Zebrafish DNA sequence from clone CH211-283P23 in linkage group 2, complete sequence Band 4.1, N-terminal| cytoskeleton| Unigene Xl.5738
32 CTGTTATGCATATATGCACATCTACTGCTGTAAAACTGCTAAATACCTGTGTAATGTTTG bld78_23248 Xl#S20966781 NM_001092701.1 8355 MGC84068 MGC84068 protein NM_001092701.1 Xenopus laevis MGC84068 protein (MGC84068), mRNA >gi|49256238|gb|BC074285.1| Xenopus laevis MGC84068 protein, mRNA (cDNA clone MGC:84068 IMAGE:6948712), complete cds NM_001092701.1
33 CCCAGAGCAAAATGGACTACTTGAAATGTTGCTGTAGGAGCACTGGCATGTTCCTTTAGA bld78_17240 Xl#S35832604 Xl.3518 Transcribed locus AL627407.10 Human DNA sequence from clone RP11-496J2 on chromosome X, complete sequence Unigene Xl.3518
36 CCTGTTCACATTCTATAACCCAATCATATTGCTCCATACTGTATTTTTAATATGCACCAG bld78_33676 Xl#S19606082 Xl.42046 Transcribed locus AC205087.4 Macaca mulatta BAC CH250-451N3 () complete sequence Unigene Xl.42046
37 TTTGGGGTTTTATCTAGGGGTTTAATTGCTGTAACATAGATCTGTATAGGGTTTCTTAAC bld78_15204 Xl#S16552335 NM_001087353.1 8355 ctss-a MGC69026 cathepsin S NM_001087353.1 Xenopus laevis cathepsin S (ctss-a), mRNA >gi|33417127|gb|BC056059.1| Xenopus laevis cathepsin S, mRNA (cDNA clone MGC:69026 IMAGE:4964455), complete cds Peptidase C1A, papain C-terminal| Proteinase inhibitor I29, cathepsin propeptide| proteolysis| cysteine-type peptidase activity| NM_001087353.1
38 GCTCAGCCTTTTTCACCCTTTCTATTTCAGTGTGTAAAAGTCTTCCTCCTGCTGATGCAA bld78_24027 Xl#S15824432 Xl.26389 Transcribed locus, moderately similar to XP_426355.2 PREDICTED: similar to alpha-2C adrenoceptor [Gallus gallus] NM_001126903.1 Xenopus tropicalis hypothetical protein LOC100145449 (LOC100145449), mRNA >gi|170284937|gb|BC161069.1| Xenopus tropicalis cDNA clone MGC:184881 IMAGE:7673134, complete cds GPCR, rhodopsin-like| G-protein coupled receptor protein signaling pathway| integral to membrane| rhodopsin-like receptor activity| Unigene Xl.26389

Total number of rows: 33206

Table truncated, full table size 13162 Kbytes.




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