NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL8609 Query DataSets for GPL8609
Status Public on May 18, 2010
Title Agilent_Escherichia coli_15K
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Escherichia coli
Manufacturer Agilent Technologies
Manufacture protocol Agilent 60-mer SurePrint technology
 
Description Design ID: Agilent-020097
8 x 15K
 
Submission date May 28, 2009
Last update date May 18, 2010
Contact name Hua Ling
Organization name Nanyang Technological University
Department Department of Chemical and Biomolecular Engineering, SCBE
Lab Prof. Matthew Wook Chang
Street address 62 Nanyang Drive
City Singapore
ZIP/Postal code 637459
Country Singapore
 
Samples (6) GSM409728, GSM409729, GSM409730, GSM409731, GSM517416, GSM517417
Series (2)
GSE16335 Escherichia coli K-12: luxS mutant LW12 vs. wild type W3110 under H2O2 stress
GSE20606 Escherichia coli K-12: luxS mutant LW12 vs. wild type W3110

Data table header descriptions
ID
Row
Col
ORF locus tag
SEQUENCE sequence of oligonucleotide
ProbeUID
ControlType
ProbeName
GeneName
SystematicName
Description
SPOT_ID

Data table
ID Row Col ORF SEQUENCE ProbeUID ControlType ProbeName GeneName SystematicName Description SPOT_ID
1 1 1 0 1 GE_BrightCorner GE_BrightCorner GE_BrightCorner --GE_BrightCorner
2 1 2 1 1 DarkCorner DarkCorner DarkCorner --DarkCorner
3 1 3 1 1 DarkCorner DarkCorner DarkCorner --DarkCorner
4 1 4 2 -1 (-)3xSLv1 NegativeControl NegativeControl --NegativeControl
5 1 5 c2962 GTTTATCTGGCGTTAATGGACAGCCAGGGATTCAACAGCTTATTTCCCATCCTTTCAATG 4 0 A_07_P030071 c_2962 c_2962 cmr|Putative PTS system IIBC component yfeV [c_2962]
6 1 6 2 -1 (-)3xSLv1 NegativeControl NegativeControl --NegativeControl
7 1 7 2 -1 (-)3xSLv1 NegativeControl NegativeControl --NegativeControl
8 1 8 Z4877 ATTGCTACCAAAATCGCGCCGTTTATTACCGGAATGGCGAAAGACGTTAACTTCAAATTT 6 0 A_07_P046244 Z4877 Z4877 cmr|putative phosphotransferase system enzyme subunit [Z4877]
9 1 9 b0018 GAGAAAAGACCTCTGTGAGGTTCACATCCGAACTGGCCAGACGGAGGTTGCTGTTTTCAC 8 0 A_07_P010256 mokC b0018 cmr|Gef protein interferes with membrane function when in excess [b0018]
10 1 10 b0242 TAACAATATCGTTCCGGTAATCAATGAGAACGATGCTGTCGCTACGGCAGAGATTAAGGT 9 0 A_07_P007924 proB b0242 cmr|gamma-glutamate kinase [b0242]
11 1 11 c3566 TGGATTCTGCTGATTAATGCCACGATCTATCTTACTCTGGGAATTTGTAGCGGACGTTTC 11 0 A_07_P033036 c_3566 c_3566 cmr|Hypothetical protein [c_3566]
12 1 12 ECs1250 AATCTCTCCCTGCAAAAATACAAATCCGATAGTAATGCCCCATCTGCTACTCATTGTTGC 12 0 A_07_P062362 ECs1250 ECs1250 cmr|C4-type zinc finger protein [ECs1250]
13 1 13 2 -1 (-)3xSLv1 NegativeControl NegativeControl --NegativeControl
14 1 14 Z0412 GTGAAAGCCAGCGTGACGAATTACAAAAGGCAAACCCTGACTGGCGTTTTGTTGAAGATG 15 0 A_07_P043700 yahI Z0412 cmr|putative kinase [Z0412]
15 1 15 ECs1795 CACTGCAACAGTATGACCGAAGATAAACCCGGAGAAGCTCATTCATCAGCCTGGACCCTG 17 0 A_07_P058326 ECs1795 ECs1795 cmr|putative portal protein [ECs1795]
16 1 16 Z5294 CAATTTGCATATCAAATGGTTAATTTTTGCACAGGACTGGTGGGTTCGGAACGGACTTTC 19 0 A_07_P049983 Z5294 Z5294 cmr|orf Unknown function [Z5294]
17 1 17 ECs2229 AAATATCACAATGTAAGTTTTCTGTTAATACGGAGAGCCTTCAGTGTCCATCCGAGGCGG 21 0 A_07_P054674 ECs2229 ECs2229 cmr|hypothetical protein [ECs2229]
18 1 18 c1548 ACATCAGTCCGATTAGCAGGGCTTTTAAGTATGCGCTTGATGGACTCACCAATAAAAAAC 23 0 A_07_P038465 c_1548 c_1548 cmr|Putative Regulatory protein CII of bacteriophage [c_1548]
19 1 19 b1619 TCCGTTATTACACCAGAAATTGAACAAAAAATGTTACAGCACACGCCGATCAGACGTCTG 25 0 A_07_P020729 hdhA b1619 "cmr|NAD-dependent 7alpha-hydroxysteroid dehydrogenase, dehydroxylation of bile acids [b1619]"
20 1 20 c2526 TTATTCTGCTCAACTCCCATGACGGTTCATCCAGCTACCAGATGTTACCCGGATATTTTC 27 0 A_07_P031938 c_2526 c_2526 cmr|Hypothetical protein yafZ [c_2526]

Total number of rows: 15744

Table truncated, full table size 2082 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap