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Platform GPL8733 Query DataSets for GPL8733
Status Public on Jul 30, 2010
Title DiscovArray human miRNA 13k array [HDDA]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Ambion
Manufacture protocol see manufacturer's website
 
Description Custom-manufactured Affymetrix GeneChip® from Ambion
The has-asg-* miRNA_ID identifiers are predicted miRs and not present in miRBase for version 9.2.
 
Submission date Jun 17, 2009
Last update date Jul 30, 2010
Contact name Andrew Hinton
E-mail(s) ahinton@ucsd.edu
Organization name UC, San Diego
Department Pediatrics
Lab Hayek
Street address 3525 John Hopkins Ct.
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Samples (301) GSM418003, GSM418004, GSM418005, GSM418006, GSM418007, GSM418008 
Series (6)
GSE16678 MicroRNA expression data from differentiation of human Cyt49 ESCs into definitive endoderm in feeder-free conditions
GSE16687 MicroRNA expression data from differentiation of human Cyt49 ESCs into definitive endoderm on MEF feeder layers
GSE16689 MicroRNA expression data from differentiation of human H9 ESCs into definitive endoderm on MEF feeder layers

Data table header descriptions
ID
SEQUENCE Bioprobe_Seq
miRNA_ID miRBase miRNA identifier
ProbeSet
MicroRNA_Accession
Precursor_Accession
MicroRNA
Precursor
Precursor_Fam_ID
MicroRNA_Seq
Precursor_Seq
Source
Sanger_Naming
Probe_Organism
Annotated_Species
Chromosome
Contig_start
Contig_end
Strand
Human
Mouse
Rat
AmbionV1_ID
AmbionV2_ID
GC_content
Multi_loci
ProbeSet_ID

Data table
ID SEQUENCE miRNA_ID ProbeSet MicroRNA_Accession Precursor_Accession MicroRNA Precursor Precursor_Fam_ID MicroRNA_Seq Precursor_Seq Source Sanger_Naming Probe_Organism Annotated_Species Chromosome Contig_start Contig_end Strand Human Mouse Rat AmbionV1_ID AmbionV2_ID GC_content Multi_loci ProbeSet_ID
aga-bantam_st2 ACTCTAGTGAAACTTTCGACTAAAA aga-bantam aga-bantam_st MIMAT0001494 MI0001599 aga-bantam aga-bantam bantam UGAGAUCACUUUGAAAGCUGAUU UGUGUGGAUGAAAUGUAAUCACAGAACCGGUUUUCAUUUUCGAUCUGACUUAUUUUUUUCACAAACAAGUGAGAUCACUUUGAAAGCUGAUUUUGUACAAUUAAUUCAACG Sanger 1 aga Anopheles gambiae 2R 33274498 33274608 + 0 0 0 NA NA 32 0 2
aga-let-7_st1 ACAACTCCATCAACCAACATATCAT aga-let-7 aga-let-7_st MIMAT0001495 MI0001600 aga-let-7 aga-let-7 let-7 UGAGGUAGUUGGUUGUAUAGU GCCUACUCCCGUGUUGAGGUAGUUGGUUGUAUAGUACCGUGGUUCCAAUACUCGACUAUACAAUCCGCUAACUUACCUCGUGGGUAGAGU Sanger 1 aga Anopheles gambiae 3R 10270708 10270797 - 0 0 0 NA NA 36 0 1
aga-miR-10_st1 AGGTGGGACATCTAGGCTTAAACAA aga-miR-10 aga-miR-10_st MIMAT0001497 MI0001602 aga-miR-10 aga-mir-10 mir-10 ACCCUGUAGAUCCGAAUUUGU GUCGAUUUAUGUUCUACAUCCACCCUGUAGAUCCGAAUUUGUUUGAAUUUAUAUUAAUAACAAAUUCGGUUCUAGAGAGGUUUGUGUGGGGCAUUUGUUAAC Sanger 1 aga Anopheles gambiae 2R 59711765 59711866 - 0 0 0 NA NA 44 0 1
aga-miR-124_st1 GTATTCCGTGCGCCACTTACGGTTC aga-miR-124 aga-miR-124_st MIMAT0001499 MI0001604 aga-miR-124 aga-mir-124 mir-124 UAAGGCACGCGGUGAAUGCCAAG CGUUUUUCUCCUGGUGUUCACUGUAGGCCUGUAUGUUCUAUUGCGGAUUUCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACG Sanger 1 aga Anopheles gambiae 3R 29001980 29002062 + 0 0 0 NA NA 56 0 1
aga-miR-13b_st1 GTATAGTGTCGGTAAAACTGCTCAA aga-miR-13b aga-miR-13b_st MIMAT0001502 MI0001607 aga-miR-13b aga-mir-13b mir-2 UAUCACAGCCAUUUUGACGAGU UGCUCGUGGUCAGGUCGUAAAAAUGGUUGUGCCGUGUCGAUUUAAGAAAAGUUCAUAUCACAGCCAUUUUGACGAGUUUGACCACUCUUGAGCA Sanger 1 aga Anopheles gambiae 2L 37757564 37757657 - 0 0 0 NA NA 40 0 1
aga-miR-14_st1 ATCAGTCAGAAAAAGAGAGAGGATA aga-miR-14 aga-miR-14_st MIMAT0001503 MI0001608 aga-miR-14 aga-mir-14 mir-14 UCAGUCUUUUUCUCUCUCCUA GCCCGAUAAGCCUGUGGGAGCGAGAUUAAGGCUUGCUGGUUAUCACGUUAAACGUAGUCAGUCUUUUUCUCUCUCCUAUCGGUACUAACGGUGC Sanger 1 aga Anopheles gambiae 3R 24898041 24898134 + 0 0 0 NA NA 36 0 1
aga-miR-1_st1 ATACCTTACATTTCTTCATACCTCG aga-miR-1 aga-miR-1_st MIMAT0001496 MI0001601 aga-miR-1 aga-mir-1 mir-1 UGGAAUGUAAAGAAGUAUGGAG GAAGCAAAGCUGCGAAAGUUCCAUGCUUCCUUGCAUUCAAUAGUAUGUUUGUAAAACCCUAUGGAAUGUAAAGAAGUAUGGAGCGAUUGGGCUAGUUC Sanger 1 aga Anopheles gambiae 3R 10569154 10569251 - 0 0 0 NA NA 36 0 1
aga-miR-210_st1 GAGAACACGCACACTGTTGCCGATA aga-miR-210 aga-miR-210_st MIMAT0001505 MI0001610 aga-miR-210 aga-mir-210 mir-210 UUGUGCGUGUGACAACGGCUA GAAAUUCAUUGCAGCUGCUGACCACUGCACAAGAUUAGAAUGCGACUCUUGUGCGUGUGACAACGGCUAUUAUGGGUUUU Sanger 1 aga Anopheles gambiae X 21450335 21450414 + 0 0 0 NA NA 52 0 1
aga-miR-219_st1 AGACTAACAGGTTTGCGTTAAGAAC aga-miR-219 aga-miR-219_st MIMAT0001506 MI0001611 aga-miR-219 aga-mir-219 mir-219 UGAUUGUCCAAACGCAAUUCUUG UUUCUAGCUCUGAUUGUCCAAACGCAAUUCUUGUCCUGUGCUGGUUUAGCUACUCAAGAGUUGUGACUGGACAUCCGUGGCUCGGAA Sanger 1 aga Anopheles gambiae 2L 21839672 21839758 - 0 0 0 NA NA 40 0 1
aga-miR-263_st1 TACATTACCGTGACCTTCTTAAGTG aga-miR-263 aga-miR-263_st MIMAT0001507 MI0001612 aga-miR-263 aga-mir-263 mir-263 UGUAAUGGCACUGGAAGAAUUCAC CCCUGGUACAUGUAAUGGCACUGGAAGAAUUCACGGGAUUUUUUUCAACAUUCCCGUGUUCUCUUAGUGGCAUACCUAGUACAGGG Sanger 1 aga Anopheles gambiae 3R 12395476 12395561 + 0 0 0 NA NA 40 0 1
aga-miR-275_st2 AGTCCATGGACTTCATCGCGCGCAA aga-miR-275 aga-miR-275_st MIMAT0001508 MI0001613 aga-miR-275 aga-mir-275 mir-275 UCAGGUACCUGAAGUAGCGCGCG UGAGCCGUCUAAUGACACGCGCUAAGCAGGAACCGGGACUUGGUACACAUUCGCUAGCAGUCAGGUACCUGAAGUAGCGCGCGUUAUUCGGCUCA Sanger 1 aga Anopheles gambiae 3R 38377342 38377436 + 0 0 0 NA NA 56 0 2
aga-miR-276_st2 GTCGCTCCATATCTCAAGGATGCCA aga-miR-276 aga-miR-276_st MIMAT0001509 MI0001614 aga-miR-276 aga-mir-276 mir-276 CAGCGAGGUAUAGAGUUCCUACG GGUGACUGCCAUCAGCGAGGUAUAGAGUUCCUACGGUAAUCGAUUGAAACUUUGUAGGAACUUCAUACCGUGCUCUUGGAUAGCCGUUUACC Sanger 1 aga Anopheles gambiae 2L 18991754 18991845 + 0 0 0 NA NA 52 0 2
aga-miR-277_st2 ATTTACGTGATAGACCATGCTGTAA aga-miR-277 aga-miR-277_st MIMAT0001510 MI0001615 aga-miR-277 aga-mir-277 mir-277 UAAAUGCACUAUCUGGUACGACA GUUUUGGGGUACGUGUCAGAGGUGCAUUUACAUCGAACUAUUCCAGUUGAGGUAUUUGUAAAUGCACUAUCUGGUACGACAUUCCAGAAU Sanger 1 aga Anopheles gambiae 2R 28234523 28234612 - 0 0 0 NA NA 36 0 2
aga-miR-278_st2 AGCCACCCTGAAAGCAGGCAAACAT aga-miR-278 aga-miR-278_st MIMAT0001511 MI0001616 aga-miR-278 aga-mir-278 mir-278 UCGGUGGGACUUUCGUCCGUUU GGUACGGUACGGACGGACGAUAGUCUUCAACGACCGUUCCGUUUGACACGAGGUCGGUGGGACUUUCGUCCGUUUGUAAGGCC Sanger 1 aga Anopheles gambiae 3L 34112621 34112703 - 0 0 0 NA NA 52 0 2
aga-miR-279_st1 ACACTGATCTAGGTGTGAGTAATTA aga-miR-279 aga-miR-279_st MIMAT0001512 MI0001617 aga-miR-279 aga-mir-279 mir-279 UGACUAGAUCCACACUCAUUAA UUCCUAUCAGUGUAAAUGGGUGUGAAUCUAGUGAUUUCACAUGAAUUUUCGAUUGUGACUAGAUCCACACUCAUUAAUGUUGUUUGGAA Sanger 1 aga Anopheles gambiae 2R 55573327 55573415 - 0 0 0 NA NA 36 0 1
aga-miR-281_st1 TGACAGTACCTTAACGAGAGAAATA aga-miR-281 aga-miR-281_st MIMAT0001513 MI0001618 aga-miR-281 aga-mir-281 mir-46 UGUCAUGGAAUUGCUCUCUUUAU GCAAUCGAAUAUGAAAAUAAAGAGAGCUAUCCGUCGACAGUAGGGAUAUAAUUCACUGUCAUGGAAUUGCUCUCUUUAUGUACAAUUCGAUAUUCAACGUGC Sanger 1 aga Anopheles gambiae 2L 17362421 17362522 - 0 0 0 NA NA 36 0 1
aga-miR-282_st1 TTAGATCGGAGAAGATCCGAAACAG aga-miR-282 aga-miR-282_st MIMAT0001514 MI0001619 aga-miR-282 aga-mir-282 mir-282 AAUCUAGCCUCUUCUAGGCUUUGUCUGU GUAACAGAGCUAAUCUAGCCUCUUCUAGGCUUUGUCUGUACAGUUUCUGCAAACCAGACAUAGCCUGUCAGAGGUUAGGUGAAAUCUGCUAGC Sanger 1 aga Anopheles gambiae 2L 17496155 17496247 - 0 0 0 NA NA 44 0 1
aga-miR-283_st1 TCCATTTATAGTCGACCATTAAGAT aga-miR-283 aga-miR-283_st MIMAT0001515 MI0001620 aga-miR-283 aga-mir-283 mir-283 UAAAUAUCAGCUGGUAAUUCU UUCGACCGAAAGGUAAAUAUCAGCUGGUAAUUCUAGGCUAUCAAUCCAUCGUGCAUCCCGGGAUUUCAGCUGAUAUCCACUUUUCCGUCGAG Sanger 1 aga Anopheles gambiae 2R 37890034 37890125 - 0 0 0 NA NA 32 0 1
aga-miR-2_st1 AACGAGTAGTTTCGACCGACACTAT aga-miR-2 aga-miR-2_st MIMAT0001516 MI0001622 aga-miR-2 aga-mir-2-2 NA GCUCAUCAAAGCUGGCUGUGAUA GUGACGCAUUGCUCAUCAAAGCUGGCUGUGAUAGCAACUAUCAAAGCAAGCUACAACAACCAAGUUUGAUGACAAUGCAUGGC Sanger 1 aga Anopheles gambiae 2L 37758706 37758788 + 0 0 0 NA NA 44 0 1
aga-miR-305_st1 GATAACATGAAGTAGTCCACGAGAC aga-miR-305 aga-miR-305_st MIMAT0001518 MI0001623 aga-miR-305 aga-mir-305 mir-305 AUUGUACUUCAUCAGGUGCUCUG UUUGUCACAUGUCUAUUGUACUUCAUCAGGUGCUCUGGUGGAUUUGAGAAAACCCGGCACAUGUUGGAGUACACUCUAUGUGCUGACAAG Sanger 1 aga Anopheles gambiae 3R 38386246 38386335 + 0 0 0 NA NA 44 0 1

Total number of rows: 14215

Table truncated, full table size 3805 Kbytes.




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