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Status
Public on Mar 15, 2010
Title
ENS SGDB Trichoderma reesei Tr20_Tiling140_1 240k oligo array
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Trichoderma reesei Manufacturer
Agilent Technologies
Manufacture protocol
In situ oligonucleotide synthesis of 60mer custom oligos. See manufacturer's web site at http://www.agilent.com/.
Catalog number
AMADID design number 020300 (1 x 244k)
Support
Glass slide
Description
Trichoderma reesei Tiling array. One probe has been design every 140 base every other strand.http://genome.jgi-psf.org/Trire2/Trire2.home.html
Web link
http://transcriptome.ens.fr/ Contributor(s)
Le Crom S , Jourdren L , Duclos A Submission date
Aug 21, 2009
Last update date
Jul 07, 2014
Contact name
Stéphane LE CROM
Organization name
École normale supérieure
Department
Biology Institute - IBENS
Lab
Genomic platform
Street address
46 rue d'Ulm
City
Paris
ZIP/Postal code
75013
Country
France
Samples (25)
GSM443138 , GSM526857 , GSM526858 , GSM526859 , GSM526860 , GSM526861
GSM526862 ,
GSM526863 ,
GSM526864 ,
GSM1493440 ,
GSM1493441 ,
GSM1493442 ,
GSM1493443 ,
GSM1493444 ,
GSM1493445 ,
GSM1493446 ,
GSM1493448 ,
GSM1493449 ,
GSM1493450 ,
GSM1493452 ,
GSM1493453 ,
GSM1493454 ,
GSM1493456 ,
GSM1493457 ,
GSM1493458 Series (3)
GSE17752 Trichoderma reesei QM6a CGH self hybridization
GSE21072 The CRE1 carbon catabolite repressor of the fungus Trichoderma reesei: a master regulator of carbon assimilation
GSE60908 Kinetic transcriptome study reveals an essentially intact cellulase induction system in a cellulase hyper-producer Trichoderma reesei strain
Data table header descriptions ID Probe identifier
SEQUENCE Oligonucleotide sequence
SCAFFOLD scaffold number
START start position of the probe on scaffold
STRAND FWD or REV strand
ACCESSION GenBank accession number '
Data table ID SEQUENCE SCAFFOLD START STRAND ACCESSION 10_44_FWD
AATTATATTAAGCTTAATAAGTATATTATAAGTAATTTTTAGTATTATAATAATAAATAT
10
44
FWD
AAIL02000033.1 10_176_REV
ACTTAAGTTACTATTTTTAAAGCTATAGAAAATTATATATATATATTATAATTTAAAAGA
10
176
REV
AAIL02000033.1 10_320_FWD
AAACTTTACTTAAATTTACTGCCTTATTTTTAAAATTATTAAAGCTAAGTTAAGAAAAGT
10
320
FWD
AAIL02000033.1 10_459_REV
ATAATAAATAATATATATTTTATATATTTTTAACTTATTATATACTTTAATTATATAAAT
10
459
REV
AAIL02000033.1 10_599_FWD
TAAACTTTAAACTAATATTTAAATAGTTAAAGCTAATTATAATATAGTATATATATTAAA
10
599
FWD
AAIL02000033.1 10_739_REV
AAGCTTAATTTTTTAACTTTTTATAATAAAAATAAGCTATTTTTAAATAAAATAAAGTAC
10
739
REV
AAIL02000033.1 10_866_FWD
ATTAAACTATTTTTTATAAGTATTATTATATACTTTTAATAATTTAAAATAATAAGACTT
10
866
FWD
AAIL02000033.1 10_1019_REV
ATTTATTTATTAATTATATATTTTATTTAGTTAATATAATTTAAATTAAAAAAAAAATTA
10
1019
REV
AAIL02000033.1 10_1159_FWD
TTAATATTTAAAATATAAAATGTTTTATAAATAAAATATAAAACTTATAATTATTTTAAT
10
1159
FWD
AAIL02000033.1 10_1311_REV
AGTAGCTGTATATAGAAAGTAATTACCCTTAAATAAATTCTAAAGCTGCTAAGACTACTA
10
1311
REV
AAIL02000033.1 10_1438_FWD
CCACCCACCACCAGAATGGCTTATCATCCACCCTTTCAAATGTTTCCAGTCCTAAAGGGT
10
1438
FWD
AAIL02000033.1 10_1582_REV
CTAAGAGGTCCAGTCGAAGTTGGCGCCTGTTCTTGACATTGGTTCCCACAGCCCGTTGAT
10
1582
REV
AAIL02000033.1 10_1712_FWD
CTGCTCACTCTCGCGGGTCAATCACTAATGGCAGAGGTAGAGACTGAAAGACGTTCGAGG
10
1712
FWD
AAIL02000033.1 10_1844_REV
TGCTTTCTCTCTATTGCCAGTCGCTGTTCAAAGAGTGAGGCCATTCCTCGAAGAGCCGGC
10
1844
REV
AAIL02000033.1 10_2000_FWD
CTCCCATCTCCAGAAAGCCAGACGAATTACCCTTGGCTGTGACATACTCCTGGGATTTGA
10
2000
FWD
AAIL02000033.1 10_2139_REV
CCGCATGGAGGGATTGACGTGGGGATTGTCCAGGTTCAACGCCTTGAATTCCTGTTGCAC
10
2139
REV
AAIL02000033.1 10_2277_FWD
TATCTATCTGAAACCTTTCACTGCGCCCTCACAGGCATCACGCCACAGGGCGCTGAAGAT
10
2277
FWD
AAIL02000033.1 10_2410_REV
CATCTTTGCCAACAGCGAACAAAGTTTCGAGCGCTTCCCGCTCGCCCACAGTGGCAGAAT
10
2410
REV
AAIL02000033.1 10_2560_FWD
TCGAAGCCCTCGGACAACTCATGGACCGTAATTTCCTACCTGTCGTTCGGTTACTACGCC
10
2560
FWD
AAIL02000033.1 10_2690_REV
GCGCACTCCTCTAAGCCAGATCCCGGGCCCAAAAGCTTTTCAAAGGTCGTCCGATAGAAG
10
2690
REV
AAIL02000033.1
238588 24022 Kbytes .Supplementary data files not provided
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