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Platform GPL9992 Query DataSets for GPL9992
Status Public on Jun 25, 2010
Title Chiton 4x2K array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Liolophura hirtosa
Manufacturer Combimatrix
Manufacture protocol Please refer to the manufacture's website for the complete protocol: http://www.combimatrix.com/tech_microarrays.htm
 
 
Submission date Jan 29, 2010
Last update date Jun 25, 2010
Contact name Luke Gardner
E-mail(s) lgardner@stanford.edu
Phone 8316556237
Organization name Stanford University
Street address 120 Ocean View Blvd, Hopkins Marine Station
City Pacific Grove
State/province California
ZIP/Postal code 93950
Country USA
 
Samples (16) GSM502371, GSM502372, GSM502373, GSM502374, GSM502375, GSM502376 
Series (1)
GSE20105 Molecular influences relating to the development and biomineralization of the chiton radula, Acanthopleura histosa

Data table header descriptions
ID
EST NAME Expressed sequence tag identification title
PROBE NAME Oligonucleotide probe identification title in relation to a expressed sequence tag
SEQUENCE Oligonucleotide probe sequence used for that spot on the microarray derived from the relevant expressed sequence tag
GB_ACC GenBank accession number of the relevant expressed sequence tag

Data table
ID EST NAME PROBE NAME SEQUENCE GB_ACC
1 PlateD-F2-5-SMART| Len:830 PlateD-F2-5-SMART_465_499 ACGTGTCTCTGGACAGATCTCAGTATGAAAGTACC GO925268
2 PlateD-G4-5-SMART| Len:585 PlateD-G4-5-SMART_113_147 AAGAAGACCGCATAATGTGAATGGAACAGTTGTTT GO925278
3 G-H9-5-SMART| Len:830 G-H9-5-SMART_533_567 TGTGGAGAAGCGTGTCATGACTGAATTAGCTAGGT GO925006
4 Plate-D-H6-5-SMART| Len:522 Plate-D-H6-5-SMART_91_130 TCTGTATATGAGCAATCTGGATCATAAACTTGTACATGTG GO925128
5 G-C4-5-SMART| Len:830 G-C4-5-SMART_65_99 GGTTGTACCAGGTCAACTAGAACTCATTGGTTCAG GO924979
6 Contig[0110]| Len:840 Contig[0110]_33_67 TGAAGCTTGTGCTCGTCTTATTCATAACCGCTGTG GO924913
7 PlateA-E2-5-SMART| Len:684 PlateA-E2-5-SMART_89_123 GTCCTAGTCCTGGCTGTTTCTAAATAGATGACGAG GO925144
8 Plate-B-D11-5-SMART| Len:375 Plate-B-D11-5-SMART_103_141 AGACAATGTTTCAATACTGTTCACTTTCGACTTTTCATT GO925049
9 Contig[0288]| Len:841 Contig[0288]_237_271 GTAATGGCAATAACACAATTTCCTCAAGGTCGTCA GO924964
10 plateD-F5-5SMART-primer| Len:830 plateD-F5-5SMART-primer_106_140 TGGCAGTGTTAACGTGCAAACCGGAGTATGCTTAT GO925271
11 Contig[0214]| Len:839 Contig[0214]_99_133 GTTCTGGTGTCCGGTGTTATAGGCTCAACAATGGC GO943996
12 Plate-C-B1-5-SMART| Len:197 Plate-C-B1-5-SMART_123_160 ATGTGTGTTAGATGGACGCTGTTTTTAAATAAACTGTT GO925072
13 PlateF-E9-5-SMART| Len:830 PlateF-E9-5-SMART_545_579 TACTGTCTCCCTTAACCTTCAGGCTAAGATCAGTG GO925337
14 Contig[0002]| Len:1161 Contig[0002]_258_292 AAGGTCATCAACGAGTTGGCCAACTGGATCAACAA GO924865
15 plateD-A5-5SMART-primer| Len:830 plateD-A5-5SMART-primer_581_615 CCATCTACCTTTAACCACTACATGTATGTACCGGC GO925230
16 PlateB-E6-5-SMART| Len:329 PlateB-E6-5-SMART_193_227 AACAGCACATGGGATATGCCAGAATACGCTCCTTT GO925177
17 G-F3-5-SMART| Len:480 G-F3-5-SMART_169_203 GTTTAGGAGACTATTCCAATTCTAACAGTGCTCCG GO924995
18 PlateB-F5-5-SMART| Len:830 PlateB-F5-5-SMART_423_457 TGAAGATGATTTCCGTAGAGCTAAAGGTCTTCCTG GO925181
19 PlateC-A4-5-SMART| Len:225 PlateC-A4-5-SMART_10_48 TAAGGTAACAACTCCTAGATTAGCAAGTAAACATACTGC GO925189
20 Contig[0110]| Len:840 Contig[0110]_53_87 TTCATAACCGCTGTGAGCGTGGTACAATGGACGTC GO924913

Total number of rows: 2240

Table truncated, full table size 222 Kbytes.




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