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Series GSE100108 Query DataSets for GSE100108
Status Public on Jan 01, 2018
Title Cold acclimation responses of Arabidopsis thaliana and Eutrema salsugineum (Thellungiella salsuginea)
Organisms Arabidopsis thaliana; Eutrema salsugineum
Experiment type Expression profiling by array
Summary Arabidopsis thaliana and Eutrema salsugineum show the ability to cold acclimate. However, the degree of freezing tolerance depends in both cases on the accession. To elucidate the transcriptional basis of this differencial freezing tolerance, we performed where we grew plants under control conditions (20°C/18°C day/night) or under cold conditions (additional 4°C for 2 weeks). Rosettes were harvested from non-acclimated and cold acclimated plants for RNA isolation. Expression patterns were compared between treatments, accessions and species.
 
Overall design In total, 36 samples were hybridized. They were derived from three independent biological experiments (replicate_1 to replicate_3).
 
Contributor(s) Lee YP, Hincha DK
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jun 16, 2017
Last update date Jul 25, 2021
Contact name Ellen Zuther
E-mail(s) Zuther@mpimp-golm.mpg.de
Phone +49 331 567 8253
Organization name MPI of Molecular Plant Physiology
Department Transcript Profiling
Street address Am Muehlenberg 1
City Potsdam
ZIP/Postal code D-14476
Country Germany
 
Platforms (2)
GPL9020 Agilent-021169 Arabidopsis 4 Oligo Microarray (V4) (Feature Number version)
GPL16263 Agilent-031554 Thellungiella salsuginea 4x44
Samples (36)
GSM1033654 6W A. thaliana rosette leaves 2W cold acclimated replicate 2
GSM1033655 6W A. thaliana rosette leaves non acclimated replicate 2
GSM1033656 6W A. thaliana rosette leaves 2W cold acclimated replicate 3
Relations
BioProject PRJNA390727

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE100108_RAW.tar 306.4 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table
Processed data provided as supplementary file
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