NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL9020 Query DataSets for GPL9020
Status Public on Aug 13, 2009
Title Agilent-021169 Arabidopsis 4 Oligo Microarray (V4) (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Arabidopsis thaliana
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arabidopsis 4 Oligo Microarray (V4)

Arrays of this design have barcodes that begin with 16021169 or 2521169.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL12621
 
Submission date Aug 11, 2009
Last update date Apr 19, 2017
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (1398) GSM461238, GSM461239, GSM461240, GSM461241, GSM463338, GSM463339 
Series (119)
GSE18513 Arabidopsis thaliana young flowers: Wild type vs. sdg2-1 mutant
GSE18646 Transcriptome in Arabidopsis yellow variegated 2 (var2)
GSE19455 NINJA connects JAZ proteins to the co-repressor TOPLESS
Relations
Alternative to GPL12621

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC RefSeqAccession
GB_ACC GenBankAccession
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE GB_ACC GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION GO_ID SEQUENCE
1 266 170 GE_BrightCorner GE_BrightCorner pos
2 266 168 DarkCorner DarkCorner pos
3 266 166 DarkCorner DarkCorner pos
4 266 164 DarkCorner DarkCorner pos
5 266 162 DarkCorner DarkCorner pos
6 266 160 DarkCorner DarkCorner pos
7 266 158 DarkCorner DarkCorner pos
8 266 156 DarkCorner DarkCorner pos
9 266 154 DarkCorner DarkCorner pos
10 266 152 DarkCorner DarkCorner pos
11 266 150 DarkCorner DarkCorner pos
12 266 148 A_84_P800302 A_84_P800302 FALSE 838759 AT1G21580 hydroxyproline-rich glycoprotein family protein At.70934 ug|EG492221 unmapped AYAXY85TF pooled cDNA populations Arabidopsis thaliana cDNA, mRNA sequence [EG492221] GO:0003674(molecular_function)|GO:0005575(cellular_component)|GO:0008150(biological_process) GCAGCATCCTCAATACATTCCTCAGTAGCTGTCATGCGACCATTTAAGCAATCAAAGTTT
13 266 146 A_84_P20838 A_84_P20838 FALSE NM_100837 NM_100837 837493 AT1G09650 F-box family protein At.42215 tair|AT1G09650.1|ref|NM_100837|ug|AK229128|ta|TA50806_3702 chr1:3127055-3127114 F-box family protein [AT1G09650.1] GO:0003674(molecular_function)|GO:0005575(cellular_component)|GO:0008150(biological_process) ATGATGTTGCTTTCGAGGCTGACTCCATCGGTCATCCTGTCTGTTATTTCCCGAGTTTAA
14 266 144 A_84_P763788 A_84_P763788 FALSE NM_202912 NM_202912 829174 AtATG18b AtATG18b (Arabidopsis thaliana homolog of yeast autophagy 18 (ATG18) b) At.31830 tair|AT4G30510.1|tair|AT4G30510.2|ref|NM_202912|ref|NM_119197 chr4:14905745-14905686 AtATG18b (Arabidopsis thaliana homolog of yeast autophagy 18 (ATG18) b) [AT4G30510.1] GO:0003674(molecular_function)|GO:0008150(biological_process) CAGTGTGAGTGATGCACTAGATCCAGCTCATCATCATGTGCTTCAAAACGCAGTTTCTTC
15 266 142 A_84_P840007 A_84_P840007 FALSE NM_101703 NM_101703 838426 AT1G18460 lipase family protein At.27535 tair|AT1G18460.1|ref|NM_101703|ta|TA34493_3702|tc|NP184598 chr1:6354181-6354240 lipase family protein [AT1G18460.1] GO:0006114(glycerol biosynthetic process)|GO:0006629(lipid metabolic process)|GO:0016298(lipase activity) TGACGTTTCGGATGATGAGATCATTCAGACTGCCATTCTAGGAGATAACGATTCATCTCT
16 266 140 A_84_P13493 A_84_P13493 FALSE NM_128619 NM_128619 817617 AT2G30670 tropinone reductase, putative / tropine dehydrogenase, putative At.52980 tair|AT2G30670.1|ref|NM_128619|tc|NP457000 chr2:13076713-13076548 tropinone reductase, putative / tropine dehydrogenase, putative [AT2G30670.1] GO:0005575(cellular_component)|GO:0008152(metabolic process)|GO:0016491(oxidoreductase activity) TTATCTACACTGCTATGGCTCAACCTTTTTTCAAAGACGCCGATTACGAGAAGAGTTTGG
17 266 138 A_84_P863067 A_84_P863067 FALSE tc|TC314163 chr3:10683940-10683999 NM_113770 structural constituent of ribosome {Arabidopsis thaliana} (exp=-1; wgp=0; cg=0), partial (84%) [TC314163] GO:0003735(structural constituent of ribosome)|GO:0005840(ribosome)|GO:0006414(translational elongation) GCCCCATAATAATAGGAGGGCACTTCCCCCTTTTCTGAGAGTTTGTGAACATATTACTCA
18 266 136 A_84_P76784 A_84_P76784 FALSE NM_118803 NM_118803 828776 MRH5/SHV3 MRH5/SHV3 (morphogenesis of root hair 5); glycerophosphodiester phosphodiesterase/ kinase At.23755 tair|AT4G26690.1|ref|NM_118803|ta|TA25810_3702|ta|TA25794_3702 chr4:13456621-13456562 MRH5/SHV3 (morphogenesis of root hair 5); glycerophosphodiester phosphodiesterase/ kinase [AT4G26690.1] GO:0006071(glycerol metabolic process)|GO:0008889(glycerophosphodiester phosphodiesterase activity)|GO:0009932(cell tip growth)|GO:0010053(root epidermal cell differentiation)|GO:0016301(kinase activity)|GO:0031225(anchored to membrane)|GO:0048765(root hair cell differentiation) TATTCTAGTTCTGTCCAAAAAACAACAGGTTATTCTTTGAGTGTGACTTTCCCTCGGATT
19 266 134 A_84_P856120 A_84_P856120 FALSE NM_113775 NM_113775 822485 AT3G28550 proline-rich extensin-like family protein At.10557 tair|AT3G28550.1|ref|NM_113775|ta|TA33856_3702|ta|N38107 chr3:10702171-10702112 proline-rich extensin-like family protein [AT3G28550.1] GO:0005199(structural constituent of cell wall)|GO:0009664(plant-type cell wall organization and biogenesis)|GO:0012505(endomembrane system) CATATGTCTACAGTTCTCCACCACCACCATCATACTCACCTTCTCCAAAAACTGAGTACT
20 266 132 A_84_P844437 A_84_P844437 FALSE NM_117216 NM_117216 826749 AT4G11450 hypothetical protein At.33569 tair|AT4G11450.1|ref|NM_117216|ta|TA49999_3702|ta|BX835399 chr4:6959173-6959114 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G63520.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65660.1) [AT4G11450.1] GO:0008150(biological_process)|GO:0009507(chloroplast) TTAGTTGAAGCAGTAACAGAGGAAGAAGAAGTCCCTAAGCCTCTGAAAGAAGCTGTGACC

Total number of rows: 45220

Table truncated, full table size 18692 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9020_old_annotations.txt.gz 5.3 Mb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap