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Series GSE102440 Query DataSets for GSE102440
Status Public on Dec 26, 2017
Title Prevention of tuberculosis in rhesus macaques by a cytomegalovirus-based vaccine
Organism Macaca mulatta
Experiment type Expression profiling by high throughput sequencing
Summary RhCMV-based TB vaccines are able to elicit and maintain immune effector responses that can control Mtb at the earliest stages of infection, and the protection afforded by this vaccine can be complete, if not sterilizing. To our knowledge, this is the first demonstration of complete prevention of TB disease in Rhesus Macaques (RM) by a long-acting vaccine after highly pathogenic (Erdman strain) Mtb challenge.
 
Overall design To test the hypothesis whether vaccination with RhCMV/TB would elicit more effective immunity than BCG, and/or enhance the efficacy of BCG, we vaccinated 3 groups of RM (n=7/group; all naturally RhCMV-infected and therefore RhCMV infected at study assignment) with the following vaccines: 1) RhCMV/TB alone 2) CMV alone and 3)BCG + CMV. We will refere to this as Study 1. To confirm and further characterize RhCMV/TB efficacy, we performed a second larger Mtb challenge study (n=9/group; all RhCMV+ at assignment) in which we compared the same 68-1 RhCMV/TB-9 Ag vaccine used in Study 1 (group 1) with an analogous RhCMV/TB-9 Ag vaccine based on the 68-1.2 RhCMV backbone (group 2), and a single 68-1 RhCMV/TB-6 Ag vector expressing a single 6 Ag Mtb polyprotein (Ag85A; ESAT-6; Rv3407; Rv2626; Rpf A; Rpf D) (group 3)
 
Contributor(s) Zak DE, Shankar S, Picker LJ
Citation(s) 29334373
Submission date Aug 09, 2017
Last update date May 15, 2019
Contact name Daniel Zak
E-mail(s) danielzak000@gmail.com
Organization name 2Seventy Bio
Lab Data Sciences
Street address 188 East Blaine Street, Suite 300
City Seattle
State/province WA
ZIP/Postal code 98102
Country USA
 
Platforms (1)
GPL14954 Illumina HiSeq 2000 (Macaca mulatta)
Samples (168)
GSM2736629 B01-07_7-U1-26603-00 [RhCMV]
GSM2736630 B01-34_34-U1-26603-14 [RhCMV]
GSM2736631 B01-61_61-U1-26603-28 [RhCMV]
Relations
BioProject PRJNA397748
SRA SRP115119

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE102440_rawCounts_GeneNames_AllSamples_RhCMV_mTB_1.csv.gz 1.5 Mb (ftp)(http) CSV
GSE102440_rawCounts_GeneNames_AllSamples_RhCMV_mTB_2.csv.gz 2.1 Mb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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